Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1039 ATGAATTCTCTCTTCTCCCCTGAAAACCTTCCGCCACCGCCCGGAATCCCAATCCCCGCCACAATCGCCACTGCCACAACGACCCCAACCCCAATACTAATCCCAAAGCTCGAACCTTTCGACGAATGGCTCAACACCCACACCCCCCAACAGCACCAATCTCAGGAACCCAATTTTTCAAACGGGTCCCTCGACCTCGACCTCAACCTCTTATGCGACGAAACCCCCGACGACCCAACCAACAACAACTTGTACTCCGAGTTCAACCGAATCTCCCAGCTCTTCCGAACCGCCTTCTCCTACGGCCCCCAAAACGACGCCGTTCCCGACCCCATCACCAAAGGCCTGCAGCAGCTCCGAAACGACGCCGTTTCCAACCCCTTCGCCAACCCCCCGCCGCAGCACCTCCGGAACGGCGCCGTTCCGGACCCGGATTCGCGGGCAATTGTGCCGGTCCCGGAGGACGGCCGCCCCTCCCCGACGGCGGTGGCCACCACGCCGAGGCGGCGGTTCAAGGAGCTGGTTCGGGTGACGGATCTCGGCGGGCCAGAGCAGCGGCACTTCCGCGACGTGGTCCGGCGGACGCGGATGGTGTACGACTCGCTGCGCGTGCTGGCGACGACGGAGGACGAGCGGCGGGCGGTGGACGCCCGCCGGGTGCGCAGCGATTTGCGCGCCTCGGCGGTGATGAGAAACTGCGGTTTGTGGCTTAACCGTGACAAGAGAATTGTTGGTGCCATTCCTGGTGTTTGCGTTGGTGATGTGTTCCTCTATAGAATGGAGTTGTGTGTGGTTGGGTTGCACGGTCAGCCTCAGGCTGGCATTGACTATCTTCCTGCTAGCATGAGTTCCAATGGTGAGCCAGTTGCCACCAGTGTGATTGTCTCTGGTGGGTATGAGGATGATGTGGATGAGGGGGATGTTATCATTTACTCTGGCCATGGTGGCCAGGACAAGCATTCTAAGCAGGTTTTTCACCAGAAGCTTGAGGGAGGGAACCTTGCAATGGAGAGGAGTATGCACTATGGGATTGAGGTGAGGGTCATTCGCGGGGTGCGGTATGATGGCACTTCCTCTGCCTCTGGGAAGGTGTATGTGTATGATGGGTTGTATAGGATTCTTGAGTGCTGGTTTGATGTAGGCAGGTCTGGTTTTGGTGTGTATAAGTACAAGCTGTGTAGGATTGATGGGCAGGCTAAGATGGGAAGCGCGGTGATGAAGGAGGCGCTTTTGCTTAGGAAAGATCCCATGTCTTTCAAACCCATGTGTTGTTTGTCGCTTGATATTTCGAATAGGAAGGAGAATGTGGTGGTCCGGCTTTTTAATGACATTGATCGGAACTATGACCCGCTTCGGTATGAGTATCTTGTGAAGACGAATTTCCCGCAGTTTGTGTTTCATCAGAGCGGGCGGGGGACGGGTTGCGAGTGTGTGGATGGGTGTGTTGAGGGGTGCTTTTGTGCTATGAAGAATGGAGGGGAGTTTCCTTATAATCAGAGTGGGAATCTCTTGAGAGGGAGGCCTTTGATTTTTGAGTGTGGCCCGTTTTGTCATTGTCCTCCTCATTGTCGGAACCGTGTAACCCAAAAGGGGCTGAAAAACAGGCTGGAGGTGTTTAGATCTAGGGAAACTGGTTGGGGAGTTAGGTCGTTGGACCTTATTCAAGCTGGTGCTTTTATCTGCGAGTACACGGGGGTTGTTCTGACTAGGGAGCAAGCACAGCTTTTGACAATGAATGGTGATTCGTTGATATATCCGAATCGGTTTACTGATAGGTGGGCAGAATGGGGGGACTTATCTCTGATAGACTCCAATTACGTGCGTCCATCGTATCCGTCAATTCCTCCCTTAGATTTTGCTATGGATGTGTCGAGAATGAGGAATGTTGCTTGCTATATGAGTCATAGTTCGACTCCCAATGTGTTGGTTCAGTTTGTTCTTTATGATCACAATAATTTGATGTTCCCTCACCTTATGCTATTTGCAATGGAGAACATCCCTCCAATGAGAGAGCTCAGCCTTGATTATGGGGTAGCTGATGAGTGGACAGGAAAGCTCTCTATATGTAACTGA 2073 0.5321 MNSLFSPENLPPPPGIPIPATIATATTTPTPILIPKLEPFDEWLNTHTPQQHQSQEPNFSNGSLDLDLNLLCDETPDDPTNNNLYSEFNRISQLFRTAFSYGPQNDAVPDPITKGLQQLRNDAVSNPFANPPPQHLRNGAVPDPDSRAIVPVPEDGRPSPTAVATTPRRRFKELVRVTDLGGPEQRHFRDVVRRTRMVYDSLRVLATTEDERRAVDARRVRSDLRASAVMRNCGLWLNRDKRIVGAIPGVCVGDVFLYRMELCVVGLHGQPQAGIDYLPASMSSNGEPVATSVIVSGGYEDDVDEGDVIIYSGHGGQDKHSKQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRYDGTSSASGKVYVYDGLYRILECWFDVGRSGFGVYKYKLCRIDGQAKMGSAVMKEALLLRKDPMSFKPMCCLSLDISNRKENVVVRLFNDIDRNYDPLRYEYLVKTNFPQFVFHQSGRGTGCECVDGCVEGCFCAMKNGGEFPYNQSGNLLRGRPLIFECGPFCHCPPHCRNRVTQKGLKNRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQAQLLTMNGDSLIYPNRFTDRWAEWGDLSLIDSNYVRPSYPSIPPLDFAMDVSRMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICN 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1039 690 Gene3D SET domain 403 690 IPR046341 -
Ssu2g1039 690 ProSiteProfiles SET domain profile. 534 677 IPR001214 GO:0005515
Ssu2g1039 690 Gene3D - 242 402 IPR036987 -
Ssu2g1039 690 MobiDBLite consensus disorder prediction 125 164 - -
Ssu2g1039 690 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 29 687 - -
Ssu2g1039 690 SUPERFAMILY SET domain 419 689 IPR046341 -
Ssu2g1039 690 SMART G9a_1 240 398 IPR003105 -
Ssu2g1039 690 SMART preset_2 426 518 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu2g1039 690 SUPERFAMILY PUA domain-like 226 407 IPR015947 -
Ssu2g1039 690 Pfam SAD/SRA domain 244 398 IPR003105 -
Ssu2g1039 690 Pfam Pre-SET motif 429 526 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu2g1039 690 ProSiteProfiles Pre-SET domain profile. 473 531 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu2g1039 690 ProSiteProfiles YDG domain profile. 245 394 IPR003105 -
Ssu2g1039 690 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 29 687 - -
Ssu2g1039 690 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 99 690 IPR025794 GO:0016571
Ssu2g1039 690 MobiDBLite consensus disorder prediction 1 22 - -
Ssu2g1039 690 Pfam SET domain 545 677 IPR001214 GO:0005515
Ssu2g1039 690 SMART set_7 534 683 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1039 Ssu-Chr2 48680630 48682702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1039 189 679 Su(var)3-9 homologs AT5G04940 38.508 9.23e-104 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu2g1039 SAD_SRA 1.1e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1039 K11420 - gmx:100795514 1171.38