Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1030 ATGGGTCGTATAGAGGCGCTTAGGAAGAAGAATGGTAGCGTTATCGGCACGATTTCCAAGCATATAGACCGATGCCTTAAAGCTAATGTTGTCGACGTGTCGCAAATAGATCGCAACAACAACTTGGTGTTGGATGCGTTGTGGTTTGATGATGAGGACAATATTGTCGGCGACCTTGGTGTAACCGTGATGCTGGCGACATTTGGATTGCAAGTGCGAGAGCTCAACACGGAGGACATTGACAAGAAGGAGAAGGTTCAGTGTTGGATAAAAGCTTTGAACGTAGCTGTGAGGTTACTCTTTCCCAATGAAAGGAAACTCTGTCATCACGTCTTTGGAAACTTCACTTCCTCTGCGGATTCTGCTTTCGCCGAGCTTTGCACGGAATTGGCAACTGCTCCACCGCGCACTGCCTAA 417 0.4772 MGRIEALRKKNGSVIGTISKHIDRCLKANVVDVSQIDRNNNLVLDALWFDDEDNIVGDLGVTVMLATFGLQVRELNTEDIDKKEKVQCWIKALNVAVRLLFPNERKLCHHVFGNFTSSADSAFAELCTELATAPPRTA 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1030 138 SUPERFAMILY Cullin repeat-like 82 132 IPR016159 -
Ssu2g1030 138 Gene3D Exocyst complex component Exo70 61 134 - -
Ssu2g1030 138 Pfam Exo70 exocyst complex subunit 88 131 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1030 Ssu-Chr2 48453967 48454461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1030 65 127 EXO70 exocyst subunit family AT5G58430 43.478 1.53e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1030 - K07195 gmx:102668498 176.792