Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1029 ATGTCAGAATCAAACGCAGTTGCGAATGGTTTGGCTGGTGCAGGTGGTGGAATTATTGCTCAAATCATAACTTATCCTCTTCAAACGGTAAACACACGCCAGCAAACTGAGAGAACACTCAAGAGGAAGAAGCAAAGTTTGCTTCTTCAGTCCTCCAACTCAACCTCTGCTCCTGGCACTCTTCTTCAGATCTTTCAGGTCATTGGAAGTGAGGGTTGGGGTGGACTCTATAGTGGCCTCAAGCCTTCTCTTCTTGGAACTGCTGCTTCTCAGGGCATTTACTACTATTTCTATCAAGTTTTCAAGAACAAGGCTGTGACCATTGCAGCTGCACGGAAAGTGAAAGGGCGTGGAGATGGTACTGTTGGGATGTTTGCTTGGCTTGTTGTGGCTGCAATTGCCGGGTCCTTGAATGTGTTGCTGACAAATCCAATATGGGTTTTGGTGACTCGGATGCAGACTCATACTCAAGCAGAAAGGAAAATCatggaggaaaagaaagaagctTTAAGGAGGGCTGCTTCTGAAAGCACCATAGCAGGCTCAACATTACAAGACAAATTGGCTGAACTGAATTCTATAAAACCTCGGCCATATGGAACTATACACGCAGCTAATGAGGTCTACAATGAAGCGGGTATAGTTGGATTTTGGAAGGGTGTCATCCCTGCCCTTATTATGGTATGCAATCCATCAATTCAGTTTATGATTTATGAGAGCTCATTAAAGCATCTAAGGGCAAAACGCGCTGCTAAGAAGCAAGGGGATACAAGTATATCTGCTTTGGAGGTCTTTTTGGTGGGAGCAATAGCAAAACTTGGAGCCACTGTCTCAACATATCCATTACTAGTTGTCAAGTCAAGGCTTCAAGCAAAACAGGAGATTGGTGGAAGTAGCTCATTAAGATACTCAGGTACTTTTGATGCGGTACTTAAAATGATCCGTTATGAAGGATTACCTGGCTTTTATAAGGGGATGAGCACAAAGATAGTACAGAGTGTTTTTGCAGCTTCTGTTCTATTCATGGTTAAGGAGGAGCTTGTTAAGGCTTTTATGGTGCTGGCAGATAAGAGCAAAAAAGTTGTATCAAATTTGAGTAGTTGA 1104 0.4239 MSESNAVANGLAGAGGGIIAQIITYPLQTVNTRQQTERTLKRKKQSLLLQSSNSTSAPGTLLQIFQVIGSEGWGGLYSGLKPSLLGTAASQGIYYYFYQVFKNKAVTIAAARKVKGRGDGTVGMFAWLVVAAIAGSLNVLLTNPIWVLVTRMQTHTQAERKIMEEKKEALRRAASESTIAGSTLQDKLAELNSIKPRPYGTIHAANEVYNEAGIVGFWKGVIPALIMVCNPSIQFMIYESSLKHLRAKRAAKKQGDTSISALEVFLVGAIAKLGATVSTYPLLVVKSRLQAKQEIGGSSSLRYSGTFDAVLKMIRYEGLPGFYKGMSTKIVQSVFAASVLFMVKEELVKAFMVLADKSKKVVSNLSS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1029 367 Gene3D Mitochondrial carrier domain 183 366 IPR023395 -
Ssu2g1029 367 ProSiteProfiles Solute carrier (Solcar) repeat profile. 259 350 IPR018108 -
Ssu2g1029 367 SUPERFAMILY Mitochondrial carrier 5 346 IPR023395 -
Ssu2g1029 367 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 104 IPR018108 -
Ssu2g1029 367 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 4 359 IPR044712 GO:0006862|GO:0055085
Ssu2g1029 367 Gene3D Mitochondrial carrier domain 1 182 IPR023395 -
Ssu2g1029 367 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 244 IPR018108 -
Ssu2g1029 367 Pfam Mitochondrial carrier protein 259 352 IPR018108 -
Ssu2g1029 367 Pfam Mitochondrial carrier protein 4 104 IPR018108 -
Ssu2g1029 367 Pfam Mitochondrial carrier protein 122 246 IPR018108 -
Ssu2g1029 367 PANTHER PEROXISOMAL NICOTINAMIDE ADENINE DINUCLEOTIDE CARRIER 4 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1029 Ssu-Chr2 48445038 48449738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1029 26 353 Chloroplast and Mitochondria Gene Families AT2G47490 29.762 2.82e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1029 K13354 - gmx:100777898 632.484