Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1028 ATGACAGattacTATCAATCATACACATATGTCTATCGACTAATCACTATTCAAACAAACCACAAAGGGACCACATCAAAGCAACACAAAACTCAAGGGAACATAGAGCAACAGTTCAAAATTACGAATATAATGATAACTCAAGAGGACTACTTACTTCAACTTGCACAAAAATCTTCTAAACCCCCAAAAGGGACGAAGTTACCAAGGATTGggatgacaattctacccaTATCCTATGGGTATCCGCAAAAATTATTCGTAATCAGGTATGAAAatgggattaaagttgctattcACATGAGTATGAAAGCAAAtacggGAAGCGCCACGTTATCACTCTTTTCGTCACCACCTCCTCACCATAAAACTCTTCCCGCCCCCTTCTCCCTCCCCATCCCTCCCTTATTTTTTAATCCAGCTGGGAAGATGAGTTCGCGACCGGTGAGGAGCACCCGTCGGAGGAAGACGAATTTGGAGCTGGACCTGAACCGTGATCCACCCGCGGAGAATGTTCGAGAAGAGGAGGAGGGACCCTCCACGCAGCAGCAGGAACGACAACAAACTCAAGTTGCGACGATTGATGTCGACGCCATTGACGATGATGTTGTTGAATCTTCACCTAGGGCTTTCGCTCAGGCTAAGAGCAATGCGAGGAGGAGAGTTCGCAGGAGGACTATTGTTGATGTGGACTTAGAAGATGAGACCAGAGGAGATCCCCcaaaccaaacaatcatcaatggcgatctttatataaatttggaAAGCAGTAGCAGTTCTGTGTGTGAAAATGCTAAGAAGTCACCTGAACGTCCTAAGGAGCCTGTCTTTAATTGTCCAATATGCATGGCTCCTTTGGTAGAAGAAATGTCAACAAGGTGTGGTCATATCTTTTGCAAGAGTTGCATTAAAGCTGCTGTAGCTGCTCAGGGTAAATGCCCTACATGTAGAAAGAAGATCTGGGAGGGGAAGAGCGTCCTGCACTTCCATCCCAAGGATAGAAAAGCCAAAGTGTTAATAGAGAAACAACAGCCTTGTGAGATCAAATGTCCCAAAATCAGTTCCAAGTTTGGATTTTTCTCAAACACATCAACACCCTGGAAAATCGCATACGTCAACCTTTGCTTTCCCTCTGGCCACTATAGCATGCTGAGGAATAGGGTGAAGTGTGAGACCATGTGGAATAGCGACGTGTTCCCAAATGACGTTTGGTTCTCCTTGTCGGCGTTCATGGTGCCGTTCATTATGTATGTGATGCAGAGGGgaagaagaggagagagaagaagggaaaagaaaaagaaaaaagTGGTGTCCCTCAGAGATCTCACTCTCAAGGACCCAATGGTCCAAGAGAAGGTTGGCATATGA 1368 0.4137 MTDYYQSYTYVYRLITIQTNHKGTTSKQHKTQGNIEQQFKITNIMITQEDYLLQLAQKSSKPPKGTKLPRIGMTILPISYGYPQKLFVIRYENGIKVAIHMSMKANTGSATLSLFSSPPPHHKTLPAPFSLPIPPLFFNPAGKMSSRPVRSTRRRKTNLELDLNRDPPAENVREEEEGPSTQQQERQQTQVATIDVDAIDDDVVESSPRAFAQAKSNARRRVRRRTIVDVDLEDETRGDPPNQTIINGDLYINLESSSSSVCENAKKSPERPKEPVFNCPICMAPLVEEMSTRCGHIFCKSCIKAAVAAQGKCPTCRKKIWEGKSVLHFHPKDRKAKVLIEKQQPCEIKCPKISSKFGFFSNTSTPWKIAYVNLCFPSGHYSMLRNRVKCETMWNSDVFPNDVWFSLSAFMVPFIMYVMQRGRRGERRREKKKKKVVSLRDLTLKDPMVQEKVGI 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1028 455 ProSiteProfiles Zinc finger RING-type profile. 279 317 IPR001841 -
Ssu2g1028 455 SMART ring_2 279 316 IPR001841 -
Ssu2g1028 455 PANTHER RING ZINC FINGER-RELATED 144 322 - -
Ssu2g1028 455 Pfam Ring finger domain 278 317 IPR001841 -
Ssu2g1028 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 358 IPR013083 -
Ssu2g1028 455 MobiDBLite consensus disorder prediction 153 181 - -
Ssu2g1028 455 PANTHER ELFLESS, ISOFORM B 144 322 - -
Ssu2g1028 455 ProSitePatterns Zinc finger RING-type signature. 294 303 IPR017907 -
Ssu2g1028 455 MobiDBLite consensus disorder prediction 140 190 - -
Ssu2g1028 455 SUPERFAMILY RING/U-box 278 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1028 Ssu-Chr2 48394111 48424828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1028 150 334 C3H Transcription Factor Family AT5G48655 41.584 3.06e-34 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1028 K22651 - gmx:100778432 234.958