LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g1025	ATGGCTAATGTTAATGCAACTGTTCCATTTCCCGCAAACCTTTTGCCAGACGATGGAAGCCCTGCATGGATGAGCAAAGCAGACAATGCATGGCAGCTGGTAGCTGCAACACTAGTGGGTATGCAAAGTGTTCCAGGGCTCATAATCTTGTATGGTGGGGCAGTAAAGAAGAAATGGGCAGTGAACTCAGCATTCATGTCACTCTATGCTTttgcttgtgtgtttttctGTTGGATTGTGTGGGGATACAGAATGTCTTTTGGTGACCAGCTTCTTCCTTTCTGGGGAAAGCCTGCTATGGCACTGGAGGAGGTTTATCTTTTCAAGCCAGCCTTTTTGGGGCGCTTCCCAAATGCCACAATGGTGTATTTCCAGTGTGTCTTTGCTGCCATTACTTTGATTCTCATAGCTGGGGCTTTGTTGGGGCGTATGAACTTTTATGCTTGGATGTTGTTTGTGCCTTTGTGGCTCACGTTCTCATACACCTTCACAGCATTCAGCATATGGAGCACTAAtggctttttaaccaaaatgGGGATAATAGATTACTCAGGCGGATATGTGATCCACTTGTCTTCCGGGGTTGCTGGATTCACAGCTGCATATTGGGTTGGACCACGGCTAAACAAGGACAGGGAGAGGTTCCCTCCAAACAACATCCTTCTTATGCTGGCAGGGGCAGGGCTGTTGTGGATGGGGTGGACGGGGTTCAACGGGGGAGATCCATACCAAGTGAACTTGGATGCTTCCTTGGCCGTCCTCAACACCCATGCTTGCACTGCTACCAGCTTGCTCACTTGGGTCATCCTTGATGTCATCTTTTTCCGAAAGCCTTCTGTTATTGGAGCTGTTCAAGGCATGATCACTGGTTTGGTTTGCATAACCCCTGCTGCAGGAGTTGTCCAAGGATGGGCAGCACTTATAATGGGAGTGTTCTCTGGCTCAGTTCCTTGGGTCACCATGATGGTGATCCATAAGAGATCAAAGCTACTGCAGAAGGTTGATGATACAATGGCAGTGTTTCACACACATGCCATTGCAGGAACCCTAGGAGGACTCCTCACTGGACTCTTTGCTGAGCCCAAACTTAACAATTTGTTCTATGGAACTTATGGTAAGTACGTTGGTCTATTTTATGGTTTCCATTCCAACATGGCCAGTACCGGGTTCAGGCAAATAGGAATCCAAATCCTTGGGGTTTTATTTGTTATCGTTGTTAATGTTGTCAGCACAAGTTTGATTTGCCTCTTCATTAGACTTTTTGTTCCATTAAGAATGTCTGAAGAGGATATGGAGATAGGTGATGAGGCTGCTCATGGGGAAGAAGCTTATGCAATCTGGGGTCAGGGCGATAAACTTGAAAATTCAAGTACAAAGTATGGAAGTTcaatatatgatgatgttgaagctGGGCCCCCCAAGAAGAAGCGTGGTGGCATGGTTGAGATGATGTAA	1455	0.4495	MANVNATVPFPANLLPDDGSPAWMSKADNAWQLVAATLVGMQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFFCWIVWGYRMSFGDQLLPFWGKPAMALEEVYLFKPAFLGRFPNATMVYFQCVFAAITLILIAGALLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSTNGFLTKMGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYQVNLDASLAVLNTHACTATSLLTWVILDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALIMGVFSGSVPWVTMMVIHKRSKLLQKVDDTMAVFHTHAIAGTLGGLLTGLFAEPKLNNLFYGTYGKYVGLFYGFHSNMASTGFRQIGIQILGVLFVIVVNVVSTSLICLFIRLFVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENSSTKYGSSIYDDVEAGPPKKKRGGMVEMM	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g1025	484	PANTHER	AMMONIUM TRANSPORTER	8	484	-	-
	Ssu2g1025	484	PANTHER	AMMONIUM TRANSPORTER MEP2	8	484	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Ssu2g1025	484	ProSitePatterns	Ammonium transporters signature.	182	207	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Ssu2g1025	484	Pfam	Ammonium Transporter Family	30	444	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Ssu2g1025	484	Coils	Coil	480	484	-	-
	Ssu2g1025	484	PRINTS	Rhesus blood group protein signature	125	141	IPR002229	GO:0005887
	Ssu2g1025	484	PRINTS	Rhesus blood group protein signature	221	239	IPR002229	GO:0005887
	Ssu2g1025	484	PRINTS	Rhesus blood group protein signature	252	274	IPR002229	GO:0005887
	Ssu2g1025	484	TIGRFAM	amt: ammonium transporter	28	444	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Ssu2g1025	484	Gene3D	Ammonium transporter AmtB like domains	16	448	IPR029020	-
	Ssu2g1025	484	SUPERFAMILY	Ammonium transporter	23	426	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g1025	Ssu-Chr2	48304856	48307596	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g1025	119	478	Inorganic Solute Cotransporters	AT2G38290	62.778	3.57e-148	426

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g1025	K03320		-	gmx:100787856	861.677