Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1021 ATGAGTTCCAATTCCAAACAAAATCAGCATCCCACAGAGGTAGCAAAGGTTGACGATGCTTTCCTCTCTGCTGCGTTACTTTGTTTTAGTAGGGTCTTCCCTGTAATCCTAAATGCAGCTATTCATCTCAATTTATTTGATATCATAGCAAAGGCGCAGAGTTCAAGTGATTCAAGTTTATCTGCCATTGAAATTGCTTCTTTTCTTCCAAATCAACACCCAAAATTGGCTAATAGGTTTGAGCGCATCTTACCTGTGCTGGCCAGTTATTCTCTTCTAAATTGGTCCATTCGCACCAATGAAAATCGTGAGAGAAAGAGTTTATGCTCTCTCACCCGTTGGTAA 345 0.4029 MSSNSKQNQHPTEVAKVDDAFLSAALLCFSRVFPVILNAAIHLNLFDIIAKAQSSSDSSLSAIEIASFLPNQHPKLANRFERILPVLASYSLLNWSIRTNENRERKSLCSLTRW 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1021 114 Pfam Dimerisation domain 36 88 IPR012967 GO:0046983
Ssu2g1021 114 Gene3D - 1 114 IPR036388 -
Ssu2g1021 114 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 111 - -
Ssu2g1021 114 SUPERFAMILY "Winged helix" DNA-binding domain 18 112 IPR036390 -
Ssu2g1021 114 PANTHER O-METHYLTRANSFERASE 1 111 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1021 Ssu-Chr2 48217906 48218250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1021 1 98 Monolignol Biosynthesis Gene Families AT5G54160 37.755 1.10e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1021 - K13066 aprc:113869089 152.14