Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1020 ATGTTTGGAAGTGTTCCAAAGGGTGATGCCATTTTACTAAAGCTTGTATGTCATAATTGGTCAGATGAAAGTTGTGTGAAGATTTTAAGGAATTGCCACAAAGCTTTGCCACAACATGGGAAGGTGATTGTTATGGAACAGATAATTCCAGAAGTCCCGGATTTAAGCAAAATTTCTGTGCTAACTAGTGCTGCTGACAGTCTCATGTTTTTAGTAACCAGTGGAAAGGAAAGAACTCTGAAAGAATTTGAGAGCTTGTGTAGGAGTTCTGGATTTTCTAGATTTCATGTTGCTTTGCCGTCAATTTTGTCAGTGGtggaattttataaataa 333 0.3664 MFGSVPKGDAILLKLVCHNWSDESCVKILRNCHKALPQHGKVIVMEQIIPEVPDLSKISVLTSAADSLMFLVTSGKERTLKEFESLCRSSGFSRFHVALPSILSVVEFYK 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1020 110 PANTHER O-METHYLTRANSFERASE 1 109 IPR016461 GO:0008168
Ssu2g1020 110 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 109 - -
Ssu2g1020 110 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 110 IPR016461 GO:0008168
Ssu2g1020 110 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 97 IPR029063 -
Ssu2g1020 110 Pfam O-methyltransferase domain 1 93 IPR001077 GO:0008171
Ssu2g1020 110 Gene3D Vaccinia Virus protein VP39 2 98 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1020 Ssu-Chr2 48082440 48082882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1020 1 97 Monolignol Biosynthesis Gene Families AT5G54160 53.061 1.15e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1020 - K21553 gmx:100779492 186.808