Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1018 ATGGTTCGGGATCTCCTAAAAGTTTCTTCAAAACCAATTGCTCTGCGATCAGTTGACATGTATATAGATGTTCTTGAATATTGCTTGTCTGATTTTCAGCAAGCAGAGTCATCCAGCTCAGCCAGAGATAATGATCCTGCTAGTACCAATGTTTTTTGTCGAGAAACTGATATCAGAATCCCTTCTTCTCAGCTGGGGTCTAATATTCACAGCTCCACTGGCATGGCCACTCAGGGAGCAGCCAGTTCTGGAGATGCATTGGAAATGATGACAAGTTTAGGGaaggctttatttgattttggtAGGGGTGTTGTTGAAGATATTGGTAGAGCAGGAACACCCGTGGCTTACAAGAATGCTGTGACAGGCATAGATCAACATAGGGATCAGAAGTTCATATCAATTGCTGCAGAACTCAAAGGTTTACCATTTCCAACTGCAACtagccatttaaaaaaattgggctTAACTGAACTTTGGGTTGGGAATAAAGAGCAACAGTCATTAATGGTTCCCTTGGGAGAGAAATTTATTCATCCTAAAATATTAGATAGGCCCCTCTTAGGTgacattttttctaatttttccctTCAATCACTATTGAAACTGCAGAACTTCTCTCTTAATCTACTGGCCAATCAtatgaaactaatttttcaTGAAGATTGGGTGAACCATGTAATGGGATCAAATATGGCTCCGTGGCTTTCATGGGAGAAACTTCCTAGTTCTGGCGGTCAAGGAGGTCCTTCCCCTGAATGGATTAGAATATTCTGGAAAAGTTTTAGGGGCTCACAGGAAGAATTATCCCTTTTCTCTGATTGGCCCCTAATTCCTGCTTTTCTTGGTAGGCCAGTATTGTGCCGTGTAAGAGAGCGACATCTGGTATTCATTCCTCCTCTTTTGGAGCACCCAATATTGACAAGTGGCATTGCAGAAAGAGAATCTGCTGAAAGTTATGCGAGCGGGGTTATGGTGTCAAGGGATAATATTTCTGAAGGTGAGTTAGCTGAGTCCTACATTTCAGCTTTTGAAAGGTTCAAAACTATATATCCCTGGTTGTTGCCAATGTTAAACCAGTGTAATATACCCATATTTGATGAGGCATTTATAGATTGTGCTGCTTCAAGCAATTGTTTCTCTATGCCTGGTCGATCATTGGGCCATGTTATTGCGTCCAAACTTGTGGCAGCTAAGCAAGCTGGATATTTCACTGAACCTACTAACCTCTCAACATCAAATTGTGATGcacttttttcacttttttctgaTGAATTCTTTTCCAATGACTTTTGCTATGGACGTGAAGAAATTGAGGTTTTGCGTTCTCTCCCTATGTATAAAACTGTTGTTGGTTCTTATACTAAGTTGCAAGGCCAAGATCAGTGTATGATCTcttcaaattcatttttaaaaccataTGATGAGTGTTGTCTTTCATATGCCACTGATTCAAATGAAAGTTCATTTCTTCGAGCCCTTGGAGTGCTGGAGTTGCATGATCAACAGATCTTAGTACGCTTTGGCTTGCCTGGCTTTGAGAGGAAACCTCAGAATGAGCAGGaggaaatattaatatatgtttttaaaaattggcaTGATCTCCAATCAGATCAATCAGTGGTTGAAGCTTTGAAAGAGActaaatttgttagaaattctGATGAGTTTTCAACAGATCTGTTGAAGCCCATGGATTTATTTGATCCCAGTGATGctttattaatatctattttcTTTGGTGAGAGAAGAAAATTTCCTGGAGAAAGGTTCAGTACAGATGGGTGGCTTCGAATACTAAGGAAACTTGGGCTTCGAACTGCTACTGAGGTAGATGTAATAATTGAATGTGCCAAAAGAGTTGAGTTTCTTGGAATTGAGTGCATGAAAGCAGGTGATTTGGATGATTTTGAGGCAGACACAATCAACACTCATTCTGAAGTTTTGCCAGAAGTGTGGGCATTAGGAGGATCTGTAATTGAGTTTGTTTTCTCCAATTTTGCTCTTTTCTTTAGCAACAACTTCTGTGATCTTCTTGGCAAGATTGCATGTGTACCTGCTGAACTGGGGTTTCCTAGTGTTGGTTGCAAGAGGGTGCTTGCTTCGTATAATGAAGCTATTTTGTCTAAAGATTGGCCTCTAGCTTGGAGTTGTGCTCCCATTCTATCCAAACACACTGTTCCTCCAGAGTATTCATGGGGACCTCTGCATCTACGGAGTCCTCCTGCTTTTTGTGCAGTTTTGAAGCACTTGCAGGTTATTGGGAGAAATGGAGGGGAAGATACTCTTGCTCATTGGCCCATTGCTTCAGGAATGAACATTGAGGAATGTACCTGCgagattttgaaatatttagacAAAATTTGGGGTTCGATTTCTTCCTCAGATGTGGCAGAGCTACGCAAAGTGGCCTTTCTGCCTGTTGCAAATGGAACACGCCTCGTGACTGCTGATGCTCTATTTGCTCGTTTGATGATTAATCTGtctccattttattttgaacttcCTACCGTATATCTCCCATTCGTAAAGATTCTTAAAGATTTGGGACTTCAGGACATACTAACACTTTCTGCTGCAAAGGGTCTTCTATTAAATCTTCAGAAATCTTGTGGATATCAGCGACTAAATCCCAATGAGCTACGTGCTGTGAtggaaattttgaatttcatttgtGATCAGATTGTTGAGGGGAACACATTAGATGGGTCAAACTGGAAATCCGAAGCCATAGTTCCTGATGATGGCTGCAGACTTGTTCATTCAGCATCCTGTGTCTATGTTGATTCTTATGGTTCTCGATATCTCAAATGTATTGATACTTCCAGAATTAGATTTGTCCATGCAGATCTTCCTGAGAGAGTCTGTATTGTGCTCGGCATCAAAAAATTGTCTGACGTTGTCATAGAGGAACTAGATGAGAATCACACACTACAGACTTTGGGTTCTCTGGGGTCTGTTTTGCTAGTGACCATCAAACAGAAGTTATCAAGCAAATCTCTTCAAACTGCTGTCTGGACTATTGTTAATAGCATGGGCAGCTACATTCCTGCATTCAATAGCTTTTCATCGGATACAATAGAATGCTTATTGAACTCTACTTCAGAAAAGCTGCAATTTGTTAAGtgtcttaaaacaaaatttctgCTCTTGCCCAATTTAGTAGATGTTACACGTGCAGGCAAAGATTTCACCATCCCAGAGTGGAAGAGTGATTCTGCGCATCAAactctttattttatgaatCAATCAAGATCTTGTATTCTAATTGCTGAACCACCAACTTATATTTCCATTTTTGATCTCATTGCTATTATAGTCAGCCAGGTATTAGGCTCTCCTATCATATTGCCAATTGGGTCCTTATTTGGTTGTCCTGAAGGATCTGAGATTGCAGTTGTTAATGTTGTAAAACTTTGCTCTGATAAGAAAGAAGTTGAACCCACAAATGGGAGCAGCAATATGGTTGGCAAGGAAATATTGCCACAAGATGCTCGTCTTGTGCAGCTCCATCCATTGAGGCCCTTTTATTCTGGTGAAATAGTGGCTTGGCGGTCTCAACAtggtgaaaaattgaaatatggtAAGGTTTCTGAAGATGTTAGACCATCTGCAGGTCAAGCTCTGTACAGACTTAAAATTGAAGTTGCACCAGGGGATACACAAATTTTCCTTTCGTCACaagtattttcatttaaaagtgTATCAGCAGGCAGTCCTCTAAAAGAATCATTGGTGCATGATAGCCCTGAATTAGGCAGTAACAGGCCCCATGTTGATTTCCCAGAGAGCTCAGGAAGGGGAGAAAGCTACTCTCAGCCTGTGAGAGAGCAGTCTGGCAAAGTTTCAGCTGCAGAACTGGTGCAGGCTGTCAATGAAATACTTTCTGCTGCTGGGATCAAAATGGACGTGGAGAAGCAGGCTCTACTTCAAAGAACAATAAATTTGCAAGGAAATCTAAAAGAGTCTCAGGCAGCTCTTGTGTTGGAGCAGGAAAAGGTTGAAAAGGCAACAAAAGAGGCTGATACAGCAAAAGCGGCATGGATTTGTCGGGTTTGTCTGAGTGCTGAGGTTGATATAACAATAGTTCCTTGTGGTCATGTATTGTGTCGTAGATGTTCTTCTGCAGTGTCAAGGTGTCCCTTTTGTCGGCTTCAGGTTACAAAAGCTATCAGAATTTATCGTCCATAA 4191 0.3863 MVRDLLKVSSKPIALRSVDMYIDVLEYCLSDFQQAESSSSARDNDPASTNVFCRETDIRIPSSQLGSNIHSSTGMATQGAASSGDALEMMTSLGKALFDFGRGVVEDIGRAGTPVAYKNAVTGIDQHRDQKFISIAAELKGLPFPTATSHLKKLGLTELWVGNKEQQSLMVPLGEKFIHPKILDRPLLGDIFSNFSLQSLLKLQNFSLNLLANHMKLIFHEDWVNHVMGSNMAPWLSWEKLPSSGGQGGPSPEWIRIFWKSFRGSQEELSLFSDWPLIPAFLGRPVLCRVRERHLVFIPPLLEHPILTSGIAERESAESYASGVMVSRDNISEGELAESYISAFERFKTIYPWLLPMLNQCNIPIFDEAFIDCAASSNCFSMPGRSLGHVIASKLVAAKQAGYFTEPTNLSTSNCDALFSLFSDEFFSNDFCYGREEIEVLRSLPMYKTVVGSYTKLQGQDQCMISSNSFLKPYDECCLSYATDSNESSFLRALGVLELHDQQILVRFGLPGFERKPQNEQEEILIYVFKNWHDLQSDQSVVEALKETKFVRNSDEFSTDLLKPMDLFDPSDALLISIFFGERRKFPGERFSTDGWLRILRKLGLRTATEVDVIIECAKRVEFLGIECMKAGDLDDFEADTINTHSEVLPEVWALGGSVIEFVFSNFALFFSNNFCDLLGKIACVPAELGFPSVGCKRVLASYNEAILSKDWPLAWSCAPILSKHTVPPEYSWGPLHLRSPPAFCAVLKHLQVIGRNGGEDTLAHWPIASGMNIEECTCEILKYLDKIWGSISSSDVAELRKVAFLPVANGTRLVTADALFARLMINLSPFYFELPTVYLPFVKILKDLGLQDILTLSAAKGLLLNLQKSCGYQRLNPNELRAVMEILNFICDQIVEGNTLDGSNWKSEAIVPDDGCRLVHSASCVYVDSYGSRYLKCIDTSRIRFVHADLPERVCIVLGIKKLSDVVIEELDENHTLQTLGSLGSVLLVTIKQKLSSKSLQTAVWTIVNSMGSYIPAFNSFSSDTIECLLNSTSEKLQFVKCLKTKFLLLPNLVDVTRAGKDFTIPEWKSDSAHQTLYFMNQSRSCILIAEPPTYISIFDLIAIIVSQVLGSPIILPIGSLFGCPEGSEIAVVNVVKLCSDKKEVEPTNGSSNMVGKEILPQDARLVQLHPLRPFYSGEIVAWRSQHGEKLKYGKVSEDVRPSAGQALYRLKIEVAPGDTQIFLSSQVFSFKSVSAGSPLKESLVHDSPELGSNRPHVDFPESSGRGESYSQPVREQSGKVSAAELVQAVNEILSAAGIKMDVEKQALLQRTINLQGNLKESQAALVLEQEKVEKATKEADTAKAAWICRVCLSAEVDITIVPCGHVLCRRCSSAVSRCPFCRLQVTKAIRIYRP 1396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1018 1396 Pfam Zinc finger, C3HC4 type (RING finger) 1349 1389 - -
Ssu2g1018 1396 SUPERFAMILY RING/U-box 1349 1390 - -
Ssu2g1018 1396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1325 1395 IPR013083 -
Ssu2g1018 1396 MobiDBLite consensus disorder prediction 1246 1276 - -
Ssu2g1018 1396 ProSiteProfiles Zinc finger RING-type profile. 1350 1384 IPR001841 -
Ssu2g1018 1396 SMART ring_2 1350 1383 IPR001841 -
Ssu2g1018 1396 PANTHER - 1 1396 - -
Ssu2g1018 1396 Coils Coil 1320 1347 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1018 1306 1394 C3H Transcription Factor Family AT1G73950 32.222 1.15e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1018 - K17592 gmx:100789980 2525.35