Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1012 ATGATAGAAGCactgattatttttttgaattcacAGGCTGGTCAACTCAGTTTTGTAGTGGGATCCCATCTTTGGATTGAGGACCCTGATTTAGCTTGGATAGATGGAGAAATCCAGGAATCTAACAATGAAGTGATCACAGTTATCTATGAATCAGGCTCGAGGGTTGTGAACAAATCAGCTAACATCTATCCCAAAGATCCAGAATTCCCACCTAATGGTGTGGAAGATATGACAAGACTGGCATATCTGCATGAACCAGGAGTACTTCAAAATTTGCAAGTTCGATATGCCATGAATGAAATTTATACATATACAGGAAATATATTGATAGCCGTGAACCCTTTTCAGAGGTTACCTCATTTGAGTGAAACTAGTACCATGGCAAAGTATAAAGGTGCGGCTTTTGGTGAGCAGAGCCCACATCCTTTTGCAATTGCAAGTTCTGCATATAGCAAAATGATAAACGAAGAAAGAAGCCAATCTATTTTGGTTAGCGGAGAAAGTGGAGCTGGTAAAACTGAAAGTACAAAGATGCTTATGCATTATCTTGCCTTTTTGGGAGGGAGAGCAGTAACTGAAGGACGGTCTGTGGAGCAACAAGTTCTGGAGTCCAATCCTGTTTTAGAAGCATTTGGCAATGCAAAGACCGTTAGGAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAGGGGAGAATTTCAGGAGCTGCTATCAGAACATATTTGCTGGAACGATCTCGTGTTTGTCAAGTTTCTGATCCTGAGAGAAATTATCATTGCTTTTATATGCTTTGTGCTGCACCACAAGAGGATGTTGATAGGTACAAATTGGGAAATCCAAGAAAGTTTCATTACCTTAATCAATCAAATTGCATTGAGCTGGATGGGTTGGATGATTCTAAGGAGTACCTCACAACTAAGAGAGCTATGGAGGTTGTTGGGATCAGCTCTGATGAGCAGGATGCTATATTTCGAATAGTAGCCGCAGTACTTCATTTGGGAAATATTGAATTTGTTAAGGGAGGGGAAGAGGAAATGGATTCCTCTCAACCCAAGGATGAGCAATCCCATTTCCACCTAAAAACCGCAGCTGAGCTTTTGATGTGTGATGAGAAGTCCCTTGAAGACTCTTTCTGTAAACGTGTTATGGTGACTCGTGGTGACACCATAACAAAATCACTTGATCCAACTTCTGCAGCTCTCAGTAGAGATGCATTGGctaaaatagtttattcaaGGCTATTTGACTGGATTGTGGACAAGATTAACAACTCTATTGGGCAAGATCCAGAATCAAATAACTTGATTGGGGTTCTAGATATATATGGATTTGAGAGTTTCAAGACAAACAGCTTTGAGCAATTTTGTATCAATTTGACAAATGAGAAATTACAGCAACATTTCAACCagCATGTCTTCAAAATGGAGCAAGAGGAATATACAAAGGAAGAGATTGATTGGAGTTATATTGAGTTCGTTGATAATCAAGATGTTCTTGATCTCATAGAGAAGAAACCCGGTGGCATTATTGCTCTCCTGGATGAGGCCTGTATGTTTCCAAGATCAACGCATGAAACATTTGCTGAAAAGCTATATCAAACCTTCAAAGACAATAAACGCTTCAGCAAGCCAAAGTTGTCTCGCACTGACTTCACCATTAACCACTATGCCGGTGACGTCACTTATCAAACTGATCTTTTccttgataaaaataaagactacGTTGTTCCAGAGCATGCTGCTCTACTCAGTGCTTCAAAGTGCCCCTTTGTTTCAGGGCTGTTCCCACCTTTACCTGaggaaactacaaaatcaacaAAGTTCTCTTCTATAGCCACTCAGTTTAAGCTACAACTGCAATCTTTGCTTGAAACACTAAATGCTACTGAGCCACACTACATTCGGTGTGTAAAGCCAAATAATCTTCTGAAGCCAGGGATATTCGAGAACAATAATGTGTTGCAGCAGCTTCGATGTGGAGGAGTAATGGAGGCAATTCGGATAAGTTGTGCTGGATATCCGACTAGAAAGAGCTTTGATGAATTTGTTCAGCGGTTTACTATCCTGGAACCTAAGGTTCTGAAAGCATGCCCAGATGAGGTGACTGCTTGCAAGAGGCTTCTAGATAGAGCAAACCTTAAAGATTATCAGATTGGAAAGACAAAGGTGTTTCTGAGAGCAGGTCAAATGGCAGAACTAGATGCATGTCGCGCTGAGGTCTTGGGAAGATCTGCAAGCATTATTCAAAGAAAAGTCTGCACATTTCTTTGCCGGAACCACTTCATTTTATTGCGGTTGTCTGCCATAGAACTTCAAAGGGTTGCTAGAGGACAACTTGCACGACATCAATATGAATGCATGAGGAGGGAAGCTGCTTCTTTGAAAATCCAGAAAGACTTCCGCATGTATATTTCCAGAAATGCTTACAAAACTATTTATGCCACAGCTGTTTATATTCAAACAGGTATGCGAGGGATGGCTGCTAGAAATGACCTTAGATTCAGGAAACGGACCCAAGCTGCAATTGTTATTCAGGGTCACTACAGAGGTTATTCAGGTCGTACTTATTTCCATAGGCTAAAGAAAGCAGCAATTGCTGCACAGTGTTCCTGGAGGAGAACATTGGCACGTAGAGAACTTCGAAAGCTTAAAATGGCTGCCAAGGAAGCCAAGGCACTTGAAGCTGCCAAAAATAATCTGGAAAAGCAAGTCCAAGAATTAACTTTGTGTCTAGAAACAGAGAAGAGAATGAggGAAGCCAAGACAcaggaaaatgaaaaactacAGCATGCTTTGCAAGAGATGGAGCTTCAGTTCCAAGAAACTAAGGCAGCCAAGACagaggaaaatgaaaaactacAGCATGCTTTGCAAGAGATGGAGCTTCAGTTCCAAAAAACTAAGGCAGCACTCATTCAGGAACGAGAGGCTACCAAGAAAGTAGCTGAGCAAACTCCAACTATACAGGAGAATTCTGCTAATGTTGTTGACAGTGAATTGATCAATAAGCTTACTGCAGAAAATGAACAACTCAAGGAACTGGTTAATTCATTGGAAAAGAAAACTGTACAGAAGAATTCTGCTAATGTTGTTGAAAGTGAATTGATCAATAAGCTTACCGCTGAAAATGAACAACTCAAGGAACTGGTTAATTCATTGGAAAAGAAAACTGTACAGGAGTTTCCTTTTAATGATACTGACAATGAGTTGATCAATAAGCTTACTTCAGAAAATGAACATCTTAAgAAAACTGTACAGGAGTTTCCTGTTAATGTTACTGACAATGAGTTGATCAATAAACTTAATACAGAAAAGGAACATCTTAAGGATCAGGTTAATTCattggaaagaaaaattgatgaaaCAGAGAGGAAATATGAAGAATGTAACAGGCTTAGTGAGGAGCGCATGAATCAAATTATAGAGACAGAATCAAAGATGATTGAGATAAAGACAAATATGCAGAGGCTTGAAGAAAAACTATCTGACATGGAAACTGAGAATCAAGTTTTGCGGCAGCAAGCCTTGTTGAGTTCATCATCCAGGAGAATGTCAGGAAAGTTTTCACCTGCTACAACTCCGCCTCTGGAAAATGGTCATCAGGCACCGCCAGGTTCTATTCCTGCAAAAACATTTGGTACAGAGGATAGTAAACTAAGGAGATCTATTATGGAGAGGCATCAAGAGAGCATAGATACTCTTTTCAAATGTGTGACAAAAGATCTTGGGTTCTCTGAAGGAAAACCTGTTGCAGCATTTACCCTTTACAATTGTCTGCTACATTGGAAATCTTTTGAAGCAGAAAAGACAAGCATATTTGATCGTCTTATTCAGCTGATTGGTTCTGAAATAGAGGATCCAGACAACAATGATTGTATGGCTTATTGGCTATCCAACACATCTTCTTTGTTTTTCCATCTTCAGCGATGTCTAAGAGTACCTACAGCACGGAAACCACCCACTCCAACATCATTTTTTGGGAGGATGACCCAGGGCTTCCGCTCATCTAATAGTCTTTCCAGCAATGCTTTTGATGTAGTGCATCAGGTTGATGCCAAGTATCCAGCTTTGCTTTTCAAGCAACAGCTTGCAGCTTATGTGGAAAAGATATATGGAATAGTTCGAGAAAATTTTAAGAAGGACTTGTCACCTCTGCTTTCTTCTTGCATTCAGGCGGATAGATCATCAAATGACAACTGCCCACCAGCTAGTTCTTGGCTCAGCATTATCGAATGCCTTAATAGATTTCTCAAGATTCTGAAAGAAAACTATGTGCCTCCTGTTCTAGTTCAGAAgctatttaatcaaatttttcaaTACATCAATGTGGAACTCTTTAATAGCCTTCTTTTACATCGAGAATGCTGCACATTCAAAAACGgagaatatataaaatcagGGTTGTCTGAACTAGAACTTTGGTGTGGTGAAGCAACAGAAGAGTGTATTGGCTCATGTTTGGATGAACTCAAACATGCAAAGCAAGCAGTTAGATTCTTGGTTGCACAACAGAAGGATGGGCTATCCTATGATGATCTTACAAATGACCTCTGCCCTGTCCTGAGCGCTCAGCAGCTTTATAGAATATGTACACTTTACTGTGATGATGATGACAATACACAAAGTGTATCACCGGATGTCACTACTAGATTGAAGCTTCTAATGACAGATGATGTAGATGAAGATAACAAATCTTTCTTGTTGGAGGACAACTCGAGTCTTCCTATCATCGTTGAGGAGATTCCTAGTTCTGCTCAGGATAAGACCATTCCAAAAGTAAAACCTCCTGCAGAACTTCTTGAGAATGCAGACTTCCAATTTTTACATGATTATTGTTAG 4860 0.3877 MIEALIIFLNSQAGQLSFVVGSHLWIEDPDLAWIDGEIQESNNEVITVIYESGSRVVNKSANIYPKDPEFPPNGVEDMTRLAYLHEPGVLQNLQVRYAMNEIYTYTGNILIAVNPFQRLPHLSETSTMAKYKGAAFGEQSPHPFAIASSAYSKMINEERSQSILVSGESGAGKTESTKMLMHYLAFLGGRAVTEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPQEDVDRYKLGNPRKFHYLNQSNCIELDGLDDSKEYLTTKRAMEVVGISSDEQDAIFRIVAAVLHLGNIEFVKGGEEEMDSSQPKDEQSHFHLKTAAELLMCDEKSLEDSFCKRVMVTRGDTITKSLDPTSAALSRDALAKIVYSRLFDWIVDKINNSIGQDPESNNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAEKLYQTFKDNKRFSKPKLSRTDFTINHYAGDVTYQTDLFLDKNKDYVVPEHAALLSASKCPFVSGLFPPLPEETTKSTKFSSIATQFKLQLQSLLETLNATEPHYIRCVKPNNLLKPGIFENNNVLQQLRCGGVMEAIRISCAGYPTRKSFDEFVQRFTILEPKVLKACPDEVTACKRLLDRANLKDYQIGKTKVFLRAGQMAELDACRAEVLGRSASIIQRKVCTFLCRNHFILLRLSAIELQRVARGQLARHQYECMRREAASLKIQKDFRMYISRNAYKTIYATAVYIQTGMRGMAARNDLRFRKRTQAAIVIQGHYRGYSGRTYFHRLKKAAIAAQCSWRRTLARRELRKLKMAAKEAKALEAAKNNLEKQVQELTLCLETEKRMREAKTQENEKLQHALQEMELQFQETKAAKTEENEKLQHALQEMELQFQKTKAALIQEREATKKVAEQTPTIQENSANVVDSELINKLTAENEQLKELVNSLEKKTVQKNSANVVESELINKLTAENEQLKELVNSLEKKTVQEFPFNDTDNELINKLTSENEHLKKTVQEFPVNVTDNELINKLNTEKEHLKDQVNSLERKIDETERKYEECNRLSEERMNQIIETESKMIEIKTNMQRLEEKLSDMETENQVLRQQALLSSSSRRMSGKFSPATTPPLENGHQAPPGSIPAKTFGTEDSKLRRSIMERHQESIDTLFKCVTKDLGFSEGKPVAAFTLYNCLLHWKSFEAEKTSIFDRLIQLIGSEIEDPDNNDCMAYWLSNTSSLFFHLQRCLRVPTARKPPTPTSFFGRMTQGFRSSNSLSSNAFDVVHQVDAKYPALLFKQQLAAYVEKIYGIVRENFKKDLSPLLSSCIQADRSSNDNCPPASSWLSIIECLNRFLKILKENYVPPVLVQKLFNQIFQYINVELFNSLLLHRECCTFKNGEYIKSGLSELELWCGEATEECIGSCLDELKHAKQAVRFLVAQQKDGLSYDDLTNDLCPVLSAQQLYRICTLYCDDDDNTQSVSPDVTTRLKLLMTDDVDEDNKSFLLEDNSSLPIIVEEIPSSAQDKTIPKVKPPAELLENADFQFLHDYC 1619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1012 1619 ProSiteProfiles IQ motif profile. 771 800 IPR000048 GO:0005515
Ssu2g1012 1619 Pfam Myosin N-terminal SH3-like domain 21 60 IPR004009 GO:0003774|GO:0005524|GO:0016459
Ssu2g1012 1619 Gene3D - 263 321 - -
Ssu2g1012 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 799 895 IPR027417 -
Ssu2g1012 1619 ProSiteProfiles IQ motif profile. 867 896 IPR000048 GO:0005515
Ssu2g1012 1619 MobiDBLite consensus disorder prediction 1184 1219 - -
Ssu2g1012 1619 Coils Coil 880 984 - -
Ssu2g1012 1619 ProSiteProfiles Dilute domain profile. 1281 1564 IPR002710 -
Ssu2g1012 1619 ProSiteProfiles IQ motif profile. 821 848 IPR000048 GO:0005515
Ssu2g1012 1619 CDD MyosinXI_CBD 1232 1586 IPR037975 GO:0007015
Ssu2g1012 1619 Gene3D - 452 636 - -
Ssu2g1012 1619 SMART iq_5 795 817 IPR000048 GO:0005515
Ssu2g1012 1619 SMART iq_5 843 865 IPR000048 GO:0005515
Ssu2g1012 1619 SMART iq_5 866 888 IPR000048 GO:0005515
Ssu2g1012 1619 SMART iq_5 770 792 IPR000048 GO:0005515
Ssu2g1012 1619 SMART iq_5 818 840 IPR000048 GO:0005515
Ssu2g1012 1619 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 19 68 IPR004009 GO:0003774|GO:0005524|GO:0016459
Ssu2g1012 1619 Gene3D Kinesin motor domain 76 675 IPR036961 -
Ssu2g1012 1619 ProSiteProfiles IQ motif profile. 844 873 IPR000048 GO:0005515
Ssu2g1012 1619 Pfam IQ calmodulin-binding motif 869 888 IPR000048 GO:0005515
Ssu2g1012 1619 Pfam IQ calmodulin-binding motif 845 864 IPR000048 GO:0005515
Ssu2g1012 1619 Pfam IQ calmodulin-binding motif 774 791 IPR000048 GO:0005515
Ssu2g1012 1619 Pfam IQ calmodulin-binding motif 798 817 IPR000048 GO:0005515
Ssu2g1012 1619 ProSiteProfiles IQ motif profile. 796 822 IPR000048 GO:0005515
Ssu2g1012 1619 PANTHER MYOSIN HEAVY CHAIN 16 1616 - -
Ssu2g1012 1619 CDD MYSc_Myo11 87 733 IPR036018 -
Ssu2g1012 1619 Pfam Myosin head (motor domain) 75 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu2g1012 1619 SMART DIL_2 1439 1546 IPR002710 -
Ssu2g1012 1619 Gene3D Myosin VI head, motor domain, U50 subdomain 323 614 - -
Ssu2g1012 1619 Coils Coil 1105 1181 - -
Ssu2g1012 1619 Coils Coil 1043 1066 - -
Ssu2g1012 1619 Gene3D - 748 798 - -
Ssu2g1012 1619 Gene3D - 846 896 - -
Ssu2g1012 1619 Gene3D - 799 845 - -
Ssu2g1012 1619 PANTHER MYOSIN 16 1616 - -
Ssu2g1012 1619 PRINTS Myosin heavy chain signature 442 470 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu2g1012 1619 PRINTS Myosin heavy chain signature 160 185 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu2g1012 1619 PRINTS Myosin heavy chain signature 207 234 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu2g1012 1619 PRINTS Myosin heavy chain signature 103 122 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu2g1012 1619 PRINTS Myosin heavy chain signature 495 523 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu2g1012 1619 Coils Coil 1008 1035 - -
Ssu2g1012 1619 Pfam DIL domain 1440 1542 IPR002710 -
Ssu2g1012 1619 Gene3D - 680 743 - -
Ssu2g1012 1619 ProSiteProfiles Myosin motor domain profile. 73 745 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu2g1012 1619 SMART MYSc_2a 67 746 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu2g1012 1619 MobiDBLite consensus disorder prediction 1184 1203 - -
Ssu2g1012 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 798 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1012 Ssu-Chr2 47831956 47862544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1012 13 1617 Myosins gene family AT1G04600 60.885 0.0 2046
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1012 K10357 - gmx:100788123 2718.34