Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1000 aTGGCTGGTAAAAGTTCAATTACTCAGCCAGAAGCCAGATATGGCTCCAACAAACTGAGCAAATTTGACTTAGCTGATCTAGAATGGACCAATAGGATTCCAGAGTGTCCTGTATACCACCCATCAGAGCAAGAGTTTGAGCATCCTTTAGTTTATCTGCAGAAGATTGCTTCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTGCAGCCTCTAATCCAGCAGCTTTGGTcttaatgaaagagaaaaacgatttcaaatttgaaacaaatgtACAGCCTCTTCGACTTTCTAAATGGAATGAAAAGGACATAATAACCTTTTCCATGAGAGGCAGAAAATATACATATCATGAATTCGAGGCCCTTGCAAACAAGGCTTTTTTCAGTAGATTTCACAGTTCTGAAGGTCTTCCTTCTTCACATGTGGAAAAGGAGTTCTGGCATGAGATGGCCCATGGAGAGAAGGAAACAGTTGAGTATGGAGTCAATGTTGAGGGTAGTGCCTTTTCATGTGATCCTAATGACAGGCTTGGAGCAAGCAAATGGaatttgaagAATTTCTCACAGCTGCTGCAGTCCCCATTGCGTTTAGTTGACAGGGAAATTCCAGGAATAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCTTGGCATGTAGAAGATCATTATTTGTACAGCATAAACTATCATCACTCGGGTGCAAATAAAACTTGGTATGGTGTGCCTGGCTATGCTACCTCTCAATTTGAAAAGACTGTCTTACATCATGTGTATTGCAATAAGGTCTTAACAAAACCTGAAGAGGATGGAGCTTTCAAGTTTCTTGCACAAAAAACAACCATGTTCCCACCAAATGTCCTGTTACAACACGATGTGGCAGTTTACAAGGCTGTACAGAAGCCGGGAGAGTTTATCATCACCTTTCCTAGAGCATATCATGCTGGATTTAATCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCTATTGGTGATTGGTTTCCACTTGGGGCTGCAGCCAGCAGGCGTTATGCACAGCTCAGAATGATGCCTTTAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGTTGGTTTACAAGTCCTCAAGAGTCAGAAATTCCAAGAACAAGCCTGAAATCACGGCATCTTATCAAGCTATTGTGCTGTCTTTCTTGCATCTTATGCAGTCTTATAAGACATCCCTTTTGCGACTGAACAGTTCAAGAAAGTTGTCAAGTTCTTCAAATACATCAGGTTCTCCACTATGCCGCCTTTGCCACAGGGATTGTTATGTAGCTTACTTGCTGTGCAAGAACTGCAATTCTCATCCAGTTTGTCTTTTCCATGACATTGCACCACAAACTTGTTTATGTGGGAGagattatactatttttaaaagaaatgacatTTTTGCACTGGAAGAAGCTACCAAAAGTTTTCAACAGGATAAAGAATGCATTGACACATTCGCTCTGTCAAGTGTATACTCCTGTGACAGAAATGAATGCATCAAAGATCCCGAGAATAAACCTCGGCACAAAGAAAAAAGTGCAAGAGGAGCTGCTAATTCTCTAGGGGCAGCATCTAAACCGAAAACAAAAGTAGCTGACAGCATCAAGCACAGTATTGAAAAGAATAAGACAACAATGAAGAATTGGAGAAACAATGGTCTTCCATCTGTGAAGGATATTGCCAGACTTCAGAGCATCTTTAAAGGCATTACCAGCCTTTGCCGGGAGCTCTTTAAGTGGAGACCAGACAATAAAGCAGAGCTGGCTTGCACTTAA 1815 0.3961 MAGKSSITQPEARYGSNKLSKFDLADLEWTNRIPECPVYHPSEQEFEHPLVYLQKIASEASKYGICKIVSPIAASNPAALVLMKEKNDFKFETNVQPLRLSKWNEKDIITFSMRGRKYTYHEFEALANKAFFSRFHSSEGLPSSHVEKEFWHEMAHGEKETVEYGVNVEGSAFSCDPNDRLGASKWNLKNFSQLLQSPLRLVDREIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPGYATSQFEKTVLHHVYCNKVLTKPEEDGAFKFLAQKTTMFPPNVLLQHDVAVYKAVQKPGEFIITFPRAYHAGFNHGFNCGEAVNFAIGDWFPLGAAASRRYAQLRMMPLIPYEELLCKEAMLVYKSSRVRNSKNKPEITASYQAIVLSFLHLMQSYKTSLLRLNSSRKLSSSSNTSGSPLCRLCHRDCYVAYLLCKNCNSHPVCLFHDIAPQTCLCGRDYTIFKRNDIFALEEATKSFQQDKECIDTFALSSVYSCDRNECIKDPENKPRHKEKSARGAANSLGAASKPKTKVADSIKHSIEKNKTTMKNWRNNGLPSVKDIARLQSIFKGITSLCRELFKWRPDNKAELACT 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1000 604 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 2 581 - -
Ssu2g1000 604 ProSiteProfiles JmjN domain profile. 36 77 IPR003349 -
Ssu2g1000 604 SUPERFAMILY Clavaminate synthase-like 184 370 - -
Ssu2g1000 604 Pfam JmjC domain, hydroxylase 213 336 IPR003347 -
Ssu2g1000 604 Pfam jmjN domain 37 69 IPR003349 -
Ssu2g1000 604 ProSiteProfiles JmjC domain profile. 183 353 IPR003347 -
Ssu2g1000 604 SMART cupin_9 183 353 IPR003347 -
Ssu2g1000 604 MobiDBLite consensus disorder prediction 516 542 - -
Ssu2g1000 604 Pfam C5HC2 zinc finger 432 483 IPR004198 -
Ssu2g1000 604 SMART JmjN_1 35 76 IPR003349 -
Ssu2g1000 604 PANTHER LYSINE-SPECIFIC DEMETHYLASE 2 581 - -
Ssu2g1000 604 Gene3D Cupin 36 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1000 Ssu-Chr2 47569843 47574501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1000 5 511 JUMONJI Transcription Factor Family AT2G34880 30.875 4.16e-65 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu2g1000 JmjC 3e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1000 - - gmx:100809650 954.125