Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0999 ATGAAGCTGTCCTTCTCCGTCCCTTCCGCGAAAACCCAATCGAAGCCCAAACCCATCAACACCTTCGGCGACACTTCCACCGCCCAAAACGACAAGGACAAACCCAAACACCTGATCACCGAATTCGACCCTTCCAAACCCGCCCCCACCCCCAAAACCCTAATCCCCCCAATCCAAAACGAATGGAGACCcatcaaaaaaatgaagaaccTCCACCTCCCCACCGCCGCCGACTCCGAATCCCTCGCGTTCGAACTCCACACCGGCGAGGACCAGCCCGGGTCCGACGTGCCCTACGGCCTCACCCTCCGCGGCAGCAGCGACAAAAAACCAGAAGAGAACGCCGAAGAAGACGGCGCCGAGCCGACGCGCAGCGTCTCGGTGGGGGCCACGATGCTGCAGAAGCTGAAGGACGACCTGCGGAGGCTGCCGGAGGACCAGGGGTTCGAGGAGTTCAAGGATGTCCCGGTCGAGGGTTTCGGCGCGGCGCTGCTCGCCGGGTACGGCTGGAAGGAAGGGATGGGGATCGGGAAGAACGCGAAGGAGGACGTGAAGGTGGTGCAGATCAAGCGGAGAACCGCCAAGGAAGGGTTAGGGTTTGTTGGCGATGCTCCTGCCGCGCTCATTCGGAGCAACAAtgacaaaaacaacaacaacaacggaAAGGACGACAAAAACAAGGACGACAAGGTCAAGGAGAAGAATGAGAAGAAGGATAAGGTTGTTAGGATTGTTGGGGGAAGAGATGCTGGGTTGAAGGGTAGTGTTGTGTCTAGCATTGGGGATGATTATGTTGTTTTGGAGCTTTCCAGGAGCGGGGAGCGGGTGAAGGTGAAGGTGGGTGATGTTGCTGAATTGGGTTCTAAGGAGGAGGAGAGGTGCTTGAGGAAATTGAAGGAGTTGAGGACTCAGCGCGAGGATAAAGGGTTGAAGAGTAAGCGCCGCAGCGGGGATGAGGTGGAGGAGAAGAGAGGGGATGTTGGTAGGAGGGAGGAGAGGAGAGTGGCGGATCACAGGAAGGGTTTTTGGCTTACAAGTCACATTCGGGTTAGGGTGATTAGCCGCGATTTGAAAGGGGGACGGTTGTATTTGAAGAAGGGGGAGGTTCTGGATGTTGTTGGGCCTACTACTTGTGATATATCCATGGATGAGGGCAGGGAGATTGTTCAAGGGGTGTCCCAAGATGTTCTTGAGACTGTGATTCCGAGACGTGGGGGACCTGTGCTTGTGTTGGCTGGTAAATACAAGGGTGTCTATGGCAGTCTCGTGGAGAGGGATTTGGACCGGGAAACTGCTGTTGTTAGGGATGCTGATACCCATGAGCTGCTCAATGTGAAACTTGAACAGATTTCAGAGTATATAGGGGATCCGAGCTTATTGGGACATTGA 1389 0.5385 MKLSFSVPSAKTQSKPKPINTFGDTSTAQNDKDKPKHLITEFDPSKPAPTPKTLIPPIQNEWRPIKKMKNLHLPTAADSESLAFELHTGEDQPGSDVPYGLTLRGSSDKKPEENAEEDGAEPTRSVSVGATMLQKLKDDLRRLPEDQGFEEFKDVPVEGFGAALLAGYGWKEGMGIGKNAKEDVKVVQIKRRTAKEGLGFVGDAPAALIRSNNDKNNNNNGKDDKNKDDKVKEKNEKKDKVVRIVGGRDAGLKGSVVSSIGDDYVVLELSRSGERVKVKVGDVAELGSKEEERCLRKLKELRTQREDKGLKSKRRSGDEVEEKRGDVGRREERRVADHRKGFWLTSHIRVRVISRDLKGGRLYLKKGEVLDVVGPTTCDISMDEGREIVQGVSQDVLETVIPRRGGPVLVLAGKYKGVYGSLVERDLDRETAVVRDADTHELLNVKLEQISEYIGDPSLLGH 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0999 462 Gene3D - 347 401 - -
Ssu2g0999 462 MobiDBLite consensus disorder prediction 82 131 - -
Ssu2g0999 462 MobiDBLite consensus disorder prediction 217 240 - -
Ssu2g0999 462 ProSiteProfiles G-patch domain profile. 157 203 IPR000467 GO:0003676
Ssu2g0999 462 MobiDBLite consensus disorder prediction 1 28 - -
Ssu2g0999 462 MobiDBLite consensus disorder prediction 306 332 - -
Ssu2g0999 462 MobiDBLite consensus disorder prediction 205 240 - -
Ssu2g0999 462 Pfam G-patch domain 144 200 IPR026822 -
Ssu2g0999 462 PANTHER G PATCH AND KOW-CONTAINING 1 460 IPR045166 GO:0000398
Ssu2g0999 462 MobiDBLite consensus disorder prediction 106 120 - -
Ssu2g0999 462 SMART kow_9 401 428 IPR005824 -
Ssu2g0999 462 SMART kow_9 235 262 IPR005824 -
Ssu2g0999 462 SMART G-patch_5 155 201 IPR000467 GO:0003676
Ssu2g0999 462 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0999 Ssu-Chr2 47566237 47567625 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0999 298 435 C2H2 Transcription Factor Family AT1G55460 34.568 4.71e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0999 K13101 - gmx:100784983 656.366