Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0997 ATGGAGGAGGGAAGTCCCGATTGCGAGAGCGAGAGCGAGAGGGAGCGAATCCGCAACATCTGCATCCTGGCGCACGTGGACCACGGCAAGACGACCCTCGCCGACCACCTCATCGCCGCGGCGGGCGGCGGCGTGGTCCACCCAAAGCAGGCCGGGCGCGTCCGGTTCCTGGACTACCTCGACGAGGAGCAGCGGCGCGCCATCACGATGAAGAGCTCCTCCATCCTCCTCCGCTACGGCCGCCACTCCGTCAACCTGATCGACTCCCCCGGCCACATCGACTTCTGCAGCGAGGTCTCCACGGCGGCGCGCCTCAGCGACGGCGCCCTCCTCCTCGTGGACGCCGTCGAGGGCGTCCACATCCAGACCCACGCCGTCCTCCGCCAGTGCTGGATCGAGCGCCTCACCCCCTGCCTCCTCCTCAACAAGATCGACCGCCTCATCACCGAGCTCAAGCTCACCCCCTCCGAGGCCTACACCCGCCTCTCCCGCATCGTCCACGAGGTCAACGGAATAGTCAGCTCCTACAGGTCCGAGAAATACCTCTCCGACGTGGACTCCCTCCTCGCCGGCACCACCGCCGAGGCCCTCGAGGATTACGACGACAACGAGGATGTCTTCCAGCCGCAGAAAGGGAATGTTATATTCGCGTGCGCCTTAGACGGTTGGGGGTTTGGGATTCGCGAGTTTGCCGAGATATACGCGTCTAAGCTTGGGGCGAGCGTGGGTGCCTTGCAGAGGGCGCTGTGGGGCGCGAGGTATTACAACCCTAAGACGAAGATGATTGTTGGGAAGAAAGGGGTCGGCGCTAATAAGAAACCCATGTTTGTTCAGTTTGTGCTGGAGCCGTTGTGGCAGGTTTATCAGGGGGCGTTGGAGGGGGATAAGGGCTTGGTTGAGAAGGTTGTTAGGTCGTTTAGTTTGTCGGTGCCGCCGCGGGAGCTGCAGAACAAGGATGTGAAGGTGGTGCTTCAGGCGGTTATGAGCCGGTGGCTTCCGCTTTCGGACGCGGTCTTGTCGATGGTGGTTCGGTGCTTGCCGGACCCTGTTGCGGCGCAGGGGTTTCGGATATCAAGGTTGATTCCGAAGCGGGAGGTTGAGGTGGATGGGGTGGAGAGGGGGCTGGTGGAGGAGGCAGAGGCCGCGAGGAAGGCGGTGGAGGGGTGTGATTGCAGGGAGGAGGTTCCTTGTGTGGCTTTTGTGTCGAAGATGTTTGCCGTGCCAGTTAAGATGCTGCCTGGACAGAGGGGGGAGGTTGGCAATGGTTATGGTGAGCAAGGAGAGGGCGACTCGGACGAGTGTTTTTTGGCGTTTGCTAGGATTTTTAGCGGGGTTTTGTATGCGGGGCAGAGAGTTTTCGTGCTTTCTGCGTTGTATGATCCGGTGAAAGGTGAGGAATCGGGGCAGAAGCATATACAGGAGGCTGAGTTGAAGTCGCTGTATTTGATGATGGGGCAAGGGTTGAAAGTGGTGGCATCTGCCAAGGCAGGGAGTATTGTTGCCATTGGAGGTCTTGGACAGCATATATTGAAAAGTGCTACTCTTTCGTCTACTCGGAATTGTTGGCCTTTTTCGAGCATGGCATTCCAAGTTGCCCCGACTTTGAGAGTTGCGATTGAGCCGTCTGACCCCGCTGATGTGGGTGCGTTGCTCAAAGGCTTGAGGCTTCTGAATCGAGCTGATCCGTTTGTTGAGGTCACGGTGTCTGCAAGGGGAGAGCATGTTCTTGCTGCTGCTGGAGAAGTTCATCTTGAGAGATGCATAAAGGATTTAAAGGAGAGGTTTGCGAAGGTAAGCTTGGAGGTCTCTCCACCTCTTGTGTCGTACAAAGAGACCATTGAGGGAGACGTATCGAATGTGCTGGAAAATTTGAAAGTTCTTAGCAGGAGATCGGATTATGTTGAAAAGGCTACACCCAATGGAAGATGTGTTGTTCGGGTGCAGGTGATGAAACTTCTCCCTTCTCTAACGAAGGTGCTCGATGAAAGCTCTGATTTACTTGGAGATATCATTGGAGTAAAGTCGGGGCAGACAGTGAAAAGTTTGGAAAGCCGGAGACCGAGTATTCTTGAAAATGATAACCCGGCTGAAGTGCTTAAAAAACGCATATTGGATGCAGTGGAGGGTGATATTTTGAGCAGGAATGAGAATGACAAGGACCATGCTGAGAAATGTAAATTGAAGTGGCTGAAGATTTTGAGGAGGATATGGGCACTTGGACCGCGGCAGATTGGTCCTAACCTTCTCTTTACTCCTGATATTAAAGCAGAAAGTACTGATAGCTCTGTCTTAATTCGTGGTTGTCGTCGTATATCAGAAAGGTTGGGCTTTGTGGCCGATTCCAGTATCAGTGACTCAGTTGCTGAGACGTCTTCACATGCAAACCAAGCTTTGTGCATGGATGCTGAGCACCTTGAGACTAGTGTTATATCTGGGTTCCAATTGGCCACTTCAGCTGGACCCTTGTGTGATGAACCTATGTGGGGTTTGGCATTTGTAGTTGAGGCACGCATATCTCCATTTTCAGGGCAGCATGATGAATCTGAAACACACCAACAATCTGAGCAGTACGGCATCTTTGCTGGGCAGGTAATTGCAACTGTCAAAGATGCTTGTAGAGCAGCTGTGCTTCAGAGCAAGCCTCGGCTTGCGGAAGCAATGTACTTCTGTGAATTGAATACACCTACTGAATATTTGGGTCCCATGTATGCTGTACTTTCCCGAAGACGGGCCCGGATTTTGAAGGAAGAGATGCAAGAAGGTTCCCCTTTCTTCACTGTGCATGCATATGTTCCTGTTTCTGAGAGCTTTGGTTTTGCGGATGAGCTTAGAAGGTGGACTTCTGGCGCCGCAAGTGCACTTCTTGTCCTTAGCCACTGGGAAGCAGTTCCTGAGGATCCTTTCTTTGTACCTAAAACAGAAGAGGAAATTGAAGAGTTTGGAGACGGTTCTAGCGTTCTTCCAAATACGGCAAGAAAGTTAATTGATGCAGTCAGACGGCGTAAGGGCCTTCCTGTGGAGGAAAAGGTAGTGCAGCATGCAACCAAGCAGAGGACACTGGCTCTATTCTTTTGGGCTGAGAAACTGTTTCCATACCGACTACAAGCTTGCAATAGTGAAAGTAGCTTTATGGTAAGTGTTGGATTTAAATTCTCTTTTGCAGTAAAATGGCATGCCTAA 3180 0.5286 MEEGSPDCESESERERIRNICILAHVDHGKTTLADHLIAAAGGGVVHPKQAGRVRFLDYLDEEQRRAITMKSSSILLRYGRHSVNLIDSPGHIDFCSEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLTPCLLLNKIDRLITELKLTPSEAYTRLSRIVHEVNGIVSSYRSEKYLSDVDSLLAGTTAEALEDYDDNEDVFQPQKGNVIFACALDGWGFGIREFAEIYASKLGASVGALQRALWGARYYNPKTKMIVGKKGVGANKKPMFVQFVLEPLWQVYQGALEGDKGLVEKVVRSFSLSVPPRELQNKDVKVVLQAVMSRWLPLSDAVLSMVVRCLPDPVAAQGFRISRLIPKREVEVDGVERGLVEEAEAARKAVEGCDCREEVPCVAFVSKMFAVPVKMLPGQRGEVGNGYGEQGEGDSDECFLAFARIFSGVLYAGQRVFVLSALYDPVKGEESGQKHIQEAELKSLYLMMGQGLKVVASAKAGSIVAIGGLGQHILKSATLSSTRNCWPFSSMAFQVAPTLRVAIEPSDPADVGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDVSNVLENLKVLSRRSDYVEKATPNGRCVVRVQVMKLLPSLTKVLDESSDLLGDIIGVKSGQTVKSLESRRPSILENDNPAEVLKKRILDAVEGDILSRNENDKDHAEKCKLKWLKILRRIWALGPRQIGPNLLFTPDIKAESTDSSVLIRGCRRISERLGFVADSSISDSVAETSSHANQALCMDAEHLETSVISGFQLATSAGPLCDEPMWGLAFVVEARISPFSGQHDESETHQQSEQYGIFAGQVIATVKDACRAAVLQSKPRLAEAMYFCELNTPTEYLGPMYAVLSRRRARILKEEMQEGSPFFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEAVPEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDAVRRRKGLPVEEKVVQHATKQRTLALFFWAEKLFPYRLQACNSESSFMVSVGFKFSFAVKWHA 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0997 1059 SUPERFAMILY Ribosomal protein S5 domain 2-like 607 883 IPR020568 -
Ssu2g0997 1059 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 15 242 IPR000795 GO:0003924|GO:0005525
Ssu2g0997 1059 SUPERFAMILY EF-G C-terminal domain-like 531 605 IPR035647 -
Ssu2g0997 1059 SUPERFAMILY EF-G C-terminal domain-like 885 983 IPR035647 -
Ssu2g0997 1059 CDD aeEF2_snRNP_like_IV 604 889 - -
Ssu2g0997 1059 CDD eEF2_snRNP_like_C 885 964 - -
Ssu2g0997 1059 Gene3D Translation factors 349 530 - -
Ssu2g0997 1059 CDD EF2_II 396 518 - -
Ssu2g0997 1059 PRINTS GTP-binding elongation factor signature 137 146 IPR000795 GO:0003924|GO:0005525
Ssu2g0997 1059 PRINTS GTP-binding elongation factor signature 19 32 IPR000795 GO:0003924|GO:0005525
Ssu2g0997 1059 PRINTS GTP-binding elongation factor signature 85 95 IPR000795 GO:0003924|GO:0005525
Ssu2g0997 1059 PRINTS GTP-binding elongation factor signature 101 112 IPR000795 GO:0003924|GO:0005525
Ssu2g0997 1059 PRINTS GTP-binding elongation factor signature 65 73 IPR000795 GO:0003924|GO:0005525
Ssu2g0997 1059 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 11 1021 - -
Ssu2g0997 1059 Pfam Elongation factor Tu domain 2 436 515 IPR004161 GO:0005525
Ssu2g0997 1059 SUPERFAMILY Translation proteins 387 527 IPR009000 -
Ssu2g0997 1059 Gene3D - 628 879 IPR014721 -
Ssu2g0997 1059 Gene3D - 8 213 IPR027417 -
Ssu2g0997 1059 Gene3D - 881 1016 - -
Ssu2g0997 1059 PANTHER - 11 1021 - -
Ssu2g0997 1059 Gene3D Elongation Factor G (Translational Gtpase), domain 3 532 608 - -
Ssu2g0997 1059 CDD EF2 18 235 - -
Ssu2g0997 1059 Gene3D Yeast translation eEF2 (G' domain) 227 332 - -
Ssu2g0997 1059 SMART EFG_C_a 882 971 IPR000640 -
Ssu2g0997 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 347 IPR027417 -
Ssu2g0997 1059 CDD EF2_snRNP_III 533 604 - -
Ssu2g0997 1059 Pfam Elongation factor G C-terminus 883 967 IPR000640 -
Ssu2g0997 1059 Pfam Elongation factor Tu GTP binding domain 16 345 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0997 Ssu-Chr2 47541142 47545779 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0997 11 1021 Eukaryotic Initiation Factors Gene Family AT3G22980 70.244 0.0 1439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0997 K14536 - pvu:PHAVU_003G003900g 1830.45