LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g0996	ATGGGACGTGGAAAGATTGAGATGAAGAGGATCGAGAACACCACCACAAGGCAAGTGACGTTCTCCAAAAGAAGAGGTGGCCTCATGAAGAAGACAAAGGAGCTTTCTGTGCTTTGTGATGCACAGATCGGGCTTATCATCTTCTCCAGCACCGGGAAGAAGTGGGAGTGGTGCACCGAACCCTTCAGGATGGAGCAGATAATAGAGAAGTACCAGAGATCCACAGGAGCTCACATACCGGAACGTGATCACCCCCGAGAAACTCTCCGTCTTGAATTGGGAATTCAACGCTATCTTGGAGAGGACATGGGGTGTTTACAATATGAGGACTTGACTAAACTTGAACAAGAATTGGAGAATTCTGTTTCAAAGGTTCGAAACCGTCGGGAGCACCGAGCAGTTTTGGAGTTTCAGAAGGCTGCAGTGGAAGCAAGCAAACCAATGCATGCGATGGATCATTTCCCATTCTTTGAAGAGCAACCTGCTGGTAACAACCTGCAACTTGCTTCCCCCCTGCTTCCACACTTTCACCCACATCTTCAGCTGGCACTGCCAAACATTCAAGACTCAGTGACGGGCCCAGAGCCATAA	591	0.489	MGRGKIEMKRIENTTTRQVTFSKRRGGLMKKTKELSVLCDAQIGLIIFSSTGKKWEWCTEPFRMEQIIEKYQRSTGAHIPERDHPRETLRLELGIQRYLGEDMGCLQYEDLTKLEQELENSVSKVRNRREHRAVLEFQKAAVEASKPMHAMDHFPFFEEQPAGNNLQLASPLLPHFHPHLQLALPNIQDSVTGPEP	196

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g0996	196	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	53	IPR002100	GO:0003677\|GO:0046983
	Ssu2g0996	196	PANTHER	MADS BOX PROTEIN	1	130	-	-
	Ssu2g0996	196	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Ssu2g0996	196	Gene3D	-	14	90	IPR036879	GO:0003677\|GO:0046983
	Ssu2g0996	196	PANTHER	MADS-BOX TRANSCRIPTION FACTOR	1	130	IPR031050	GO:0005634\|GO:0048316
	Ssu2g0996	196	Coils	Coil	108	128	-	-
	Ssu2g0996	196	Pfam	K-box region	90	132	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Ssu2g0996	196	CDD	MADS_MEF2_like	2	78	IPR033896	GO:0000977\|GO:0045944
	Ssu2g0996	196	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Ssu2g0996	196	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Ssu2g0996	196	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Ssu2g0996	196	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Ssu2g0996	196	SUPERFAMILY	SRF-like	2	85	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g0996	Ssu-Chr2	47523042	47526591	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g0996	1	193	MADS-box Gene Family	AT5G23260	38.492	4.06e-42	140

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Ssu2g0996		K-box	2e-08	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g0996	-		-	gmx:100783876	283.493