Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0991 ATGTCCAACTCAGACGGAGCCACTAACGGCGTGAGCACCAACGACGCAGCAATCGCGGAGTCCCAGCGCAGCACCCCGTCGAACGCGGTGGCCGGGAAGAAACCCCCGTCGAAGGACCGTCACAGCAAGGTGGACGGGCGCGGGCGGCGCATTCGCATGCCGATCATATGCGCCGCTCGCGTGTTCCAGCTCACGCGCGAGCTCGGGCACAAGTCCGACGGCCAGACCATCGAGTGGCTACTCCGCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACCACTCCCGCCAGCTTCTCCGCCGTCTCCGACCACAAGCCCCTCCTCCCGTCTCCCCCCGCGCCCTTCATCCTCGGCAAACGCATTCGCCCCGACGACGACGCCGCCGTCTCCAAAGACGACGCCGTTTCTCTCGTCGCCCCTCCCACGCCGCCCGCGCTCTGGGCCCTCCCTCCCCGCCCCGACTTCTGGAGTTTCGCCGCCGCAGCCGCGGGGCCGCCCGAACTCGTCTCGGTGTCGCCGCCGAACTCGAGTTTTCACCACCATcagcaacagcaacaacaacaacaacaacaacaagccGCCATGGGAGAGGCTTCGGCGGCGAGGCTCGGGAATTACCTTCCCGGCCACCTGAATTTGCTCGCCTCATTGTCCGGCGGCCACGGGAATTCCGGCCGGCGAGACGACGAGCCTCGTTGA 708 0.6525 MSNSDGATNGVSTNDAAIAESQRSTPSNAVAGKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSAVSDHKPLLPSPPAPFILGKRIRPDDDAAVSKDDAVSLVAPPTPPALWALPPRPDFWSFAAAAAGPPELVSVSPPNSSFHHHQQQQQQQQQQQAAMGEASAARLGNYLPGHLNLLASLSGGHGNSGRRDDEPR 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0991 235 MobiDBLite consensus disorder prediction 34 49 - -
Ssu2g0991 235 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 232 - -
Ssu2g0991 235 MobiDBLite consensus disorder prediction 1 31 - -
Ssu2g0991 235 MobiDBLite consensus disorder prediction 170 201 - -
Ssu2g0991 235 Pfam TCP family transcription factor 37 195 IPR017887 -
Ssu2g0991 235 ProSiteProfiles TCP domain profile. 37 91 IPR017887 -
Ssu2g0991 235 MobiDBLite consensus disorder prediction 1 49 - -
Ssu2g0991 235 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 232 IPR005333 GO:0003700
Ssu2g0991 235 MobiDBLite consensus disorder prediction 173 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0991 Ssu-Chr2 47376862 47377569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0991 11 235 TCP Transcription Factor Family AT5G23280 60.159 8.40e-81 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu2g0991 TCP 4.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0991 K16221 - gmx:100795254 328.561