Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0990 ATGGGTATTAATACTCCACGCTTGCTTCGGACGGTTTCCAGCTTGGTTCTGATTCTAAGTGTTTCATCATTGGCCTCGGCGTCTCTGAAAGTGGGTTTCTACAGCTCCGCATGTCCATCCGCCGAGGCAATAGTGAGAAGCACAGTAAACAAAGCAATTTCCGACAACCCAGGCATAGCTGCTGGTCTCATTAGAATGCATTTCCATGATTGCTTTGTCAGGGGTTGTGATGGTTCTGTGCTACTAGCATCTACATCGGGTAACCCAGTAGCTGAGAGAGACAATTCCATCAACAATCCAAGCTTACGCGGTTTCGAGGTGATTGAGGATGTCAAGACCCAAATAGAAGCTGCATGTCCTCAAACAGTGTCGTGTGCAGACATTTTGGCATTTGCAGCACGGGACAGTGCTCTTAAAGTTGGTGGCATAAACTACGACGTACCATCAGGACGCAGAGACGGTCTTGTCTCTATCGGTGATGAAGTGCCACAAAATCTTCCTGGACCAACCTTGAGTGCTGATGAACTTGTTACTAATTTTGCACGAAAGGGGTTGTCTGTAGATGAAATGTGTCCTGCACCACCCGCCACCACAGACCCAACCGTGGCTCTTGAGCCTTCCACTCCTATTCGTTTGGACAACAAATACTATGAGGGATTGATCAACCATCGTGGCTTGTTGACATCAGATCAGACCTTGTTTACCAGCCAGTCCACAAAGGAAATGGTTCAAAGCAATGCATACAATGGTGCAAGTTGGGCTGAGAAGTTTGCCCAGGCGATGGTGCGCATGGGTTCTATAGAAGTGCTTACTGGCTCCGATGGTGAGATCAGGATGCATTGCAGctttgtcaattaa 858 0.4732 MGINTPRLLRTVSSLVLILSVSSLASASLKVGFYSSACPSAEAIVRSTVNKAISDNPGIAAGLIRMHFHDCFVRGCDGSVLLASTSGNPVAERDNSINNPSLRGFEVIEDVKTQIEAACPQTVSCADILAFAARDSALKVGGINYDVPSGRRDGLVSIGDEVPQNLPGPTLSADELVTNFARKGLSVDEMCPAPPATTDPTVALEPSTPIRLDNKYYEGLINHRGLLTSDQTLFTSQSTKEMVQSNAYNGASWAEKFAQAMVRMGSIEVLTGSDGEIRMHCSFVN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0990 285 Pfam Peroxidase 45 190 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu2g0990 285 Pfam Peroxidase 198 247 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu2g0990 285 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601
Ssu2g0990 285 PANTHER PEROXIDASE 25-RELATED 191 283 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu2g0990 285 Gene3D Peroxidase, domain 2 192 264 - -
Ssu2g0990 285 PANTHER PEROXIDASE 25-RELATED 20 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu2g0990 285 CDD secretory_peroxidase 30 284 IPR033905 GO:0004601|GO:0042744
Ssu2g0990 285 Gene3D - 32 166 - -
Ssu2g0990 285 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu2g0990 285 PRINTS Haem peroxidase superfamily signature 205 220 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu2g0990 285 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu2g0990 285 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu2g0990 285 ProSiteProfiles Plant heme peroxidase family profile. 28 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu2g0990 285 SUPERFAMILY Heme-dependent peroxidases 29 285 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu2g0990 285 PANTHER PEROXIDASE 191 283 - -
Ssu2g0990 285 PANTHER PEROXIDASE 20 191 - -
Ssu2g0990 285 Gene3D Peroxidase, domain 2 167 190 - -
Ssu2g0990 285 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu2g0990 285 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu2g0990 285 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu2g0990 285 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu2g0990 285 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu2g0990 285 Gene3D - 265 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0990 Ssu-Chr2 47363426 47364523 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0990 13 285 Peroxidase AT5G17820 38.978 7.78e-71 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0990 K00430 - gmx:100786791 436.417