Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0980 ATGTTTTTGAACTTCGAAAAGGGCTATTTAAGGGAAAATGTCTGCGACGTCCAAGGTCCTGCCTGCTCCCACTCTATCAAATCATTGCCTCCTGAGTTCAAGCTTATTGCTGGTGATCTGACTTCTGGTCTAACGGAAAACTGTGGAGATGCTAAGTTGAGAAGCAGTGATGTGATTGGATCAGGTAGTCCAGAAAATGATGTTCTGATAGGGGAGGTTTCTGAGGAAGCTCAGAACTGTGCCGGTGACATGGGTCTTTACGACGAGGACTTAGCCTACAGCAGAAAAGGTGTATCATTAGAAGACAGGTCATCAATTGCTGAGGAAGACTTAGAATCTGTTCCTTTGCCCTTCCCTTCAATTTCAATGTCCTCAAGGGAACGCAGGTGGAGTGATACAACACCTTATGCTTCAAAGAAGAAGCTTCAGTCTTGGTTTCAACTTCCAAATGGGAATTGGGAGCTGGGGAAGATAATAAAAACTTCTGGAAATGAATCCATCATTTCACTGCCTGATGGGAAGGTTTTGAAAGTGAAAGAAGAAAGTTTAGTACCAGCAAATCCTGATATCCTTGATGGGGTGGATGACCTCATGCAACTTAGTTATTTAAATGAACCGTCAGTTTTATACAACCTGCAATATAGATACAATCAAAACATGATTTATACAAAAGCAGGGCCTGTATTGGTTGCTATAAATCCCTTTAAGAAAGTTCCTTTATATGGTAATGATTATATTGAAGCCTACAAGCGTAAAGCAATTGAAAGCCCTCATGTATATGCAATAACAGACACGGCCATCCGAGAAATGATACGAGGACCTATAATAATAGTTATCATGTGCATATTCAGTGGTGAGAGTGGAGCAGGGAAGACTGAGACAGCAAAAATAGCAATGCAGTACTTGGCTGCCCTTGGTGGTGGAAGTGGAATAGAGTATGAGATTTTAAAGACTAATCCAATACTAGAAGCCTTTGGTAACGCAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGCGAAACTGGAAAAATCTCTGGTGCTAATATTCAAACATGTAAGTTTTATTCTTCTAGAGTAGTCCAATGCAATGAAGGGGAAAGAtcgtatcatatattttatcagCTATGTGCTGGTGCACCTCCATCTCTCAGGGGGAAGCTAAACCTACAAAATGCAGAAGACTATAAATACCTGAGGCAGAGcaattgttattcaattactgGTGTTAATGATGCAGAAGAATTTGGCACAGTCATGGAAGCTCTTGATGTTGTCCACATTAGTAAAGAAGACCAGGAGAATGTATTTGCAATGCTTGCTGCAGTATTATGGTTAGGGAACATATCATTTACTGTGATTGATAATGAAAATCATGTTCAAGCTGTAGAAGATGAGGGTCTGTTCCATGTAGCCAAATTAATTGGCTGTGACATTGAAGATCTCAAGTTGACTCTATCAACTCGCAAAATGAAAGTTGGTAATGATAATATTGTCCAAAAGTTGACACTATCACagGCAATTGATGCAAGAGATGCTTTGGCAAAGTCAATATATGCATGCCTGTTTGATTGGTTGgttgaacaaataaataaatcacttGCTGTTGGCAAAAGACGTACTGGCAGATCGATCAGTATTCTAGATATCTACGGCTTTGAATCATTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAGAGATTACAGCAACACTTCAATCGTCATTTATTCAAGTTAGAACAGGAGGAATATATTCAAGATGGCATTGACTGGGCTAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTTGAGAAGAGGCCACTGGGGTTATTATCCCTGTTAGATGAAGAGTCCACTTTCCCAAATGGCACAGATTTAACATTTGCTAACAAGCTTAAACAGCATTTGAATTCTAATTCGTGTTTCAAAGGAGAAAGAGACCAAGCCTTTACTGTACACCATTATGCTGGGCAGGTAACCTACGATACAAGTGGATTTTTGGAGAAGAACAGGGACCTATTGCACTTGGATTCCATCCAACTTCTATCCTCATGCGTGTGTCCTCTTCCTCAAATATTTGCATCTCATATGCTCACTCAGTCTGATAAGCTGGTAGTCGGTCCCTTGCACAAGTCAGGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCAACAAAATTCAAGGGTCAATTGTTCCAACTGATGCAACGATTAGAGAGCACTACTCCACATTTTATTCGCTGCATTAAACCCAATAATCTCCAATCACCTGAATCATATGAGCAAGGGCTTGTATTGCAACAGCTGAGATGCTGTGGGGTCCTGGAAGTAGTTCGAATATCGAGATCAGGCTTTCCAACAAGAATGTCTCACCAAAAGTTTGCCAGAAGATATGGTTTTCTCCTCCTTGATAATGTTGCATCTCAGGATCCACTTAGTGTTTCAGTTGCAATTCTTCATCAGTTTAATATTTTGCCTGAGATGTATCAAGTTGGctacacaaaattatttttccgaACAGGGCagATTGGTGTGCTTGAAGATACTAGAAATCGTACCCTCCATGGCATTTTACGTGTCCAAAGTTGTTTCAGGGGTTATCAAGCTCGTCGTTCTCTCAAGGAGCTTCGGGGGGGAATCACTACTTTGCAGTCAtTTATTAGGGGAGGCAAAACCAGAAAGGCATACTCAGCTTTACTTAAGAGGCATAGAGCCGCCGTTATTATACAGAAGCGGATGAAAGCAGTATTTGCAAGAAACAGAATGAGGACTATTAGTAGTGCTGCAATAGTCATACAAGCAGtTATTCGTGGTTGGTTGGTCAGAAGATGCTCCGGAGATATTGGATTTTTGAAATCTGGAGACACAAAGATGAAAGAGTCAGATGAGGTTCTGGTTAAGTCATCTTTCCTGGCTGAATTACAGCGCCGGGTACTTAAGGCTGAAGCTGCTCTGAGAGAGAAAGATGAGGAAAATGATATTCTTCATCAACGTCTCCAACAATATGAGAGCAGATGGTCTGAGTATGAGTTAAAGATGAAATCCATGGAAGAAGTGTGGCAGAAACAAATGAGATCCCTACAATCTAGCCTCTCCATTGCAAAGAAGAGCCTGGCTATTGATGACTCTGAAAGAAATTCAGATGCATCTGTTAATGCAAGTGATGAGCGGGATTACAGCGGGGATGTGGGAGGTAATCAAAAGCGCCAAGAAAGCAATGGGGCGAGATCAACGAGTGCTGGTTTAAGTGTTATAAGTCGGCTGGCTGAAGAATTTGAGCATAGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTTGAGGTAAGATCTGGTCAGGTAGAAGCAAGTTTGAACCCAGATCAAGAGCTTAGAAGGTTAAAACAAATGTTTGAAGCTTGGAAAAAGGATTATGGGGCAAGACTGCGTGAAACAaagatcattttaaataaacttggAAGTGAAGATGGCGCACttgagaaaatgaagaaaaagtggTGGGGAAGAAGGAACAGTACAAggataaattga 3576 0.3954 MFLNFEKGYLRENVCDVQGPACSHSIKSLPPEFKLIAGDLTSGLTENCGDAKLRSSDVIGSGSPENDVLIGEVSEEAQNCAGDMGLYDEDLAYSRKGVSLEDRSSIAEEDLESVPLPFPSISMSSRERRWSDTTPYASKKKLQSWFQLPNGNWELGKIIKTSGNESIISLPDGKVLKVKEESLVPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNQNMIYTKAGPVLVAINPFKKVPLYGNDYIEAYKRKAIESPHVYAITDTAIREMIRGPIIIVIMCIFSGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTCKFYSSRVVQCNEGERSYHIFYQLCAGAPPSLRGKLNLQNAEDYKYLRQSNCYSITGVNDAEEFGTVMEALDVVHISKEDQENVFAMLAAVLWLGNISFTVIDNENHVQAVEDEGLFHVAKLIGCDIEDLKLTLSTRKMKVGNDNIVQKLTLSQAIDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKRPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFKGERDQAFTVHHYAGQVTYDTSGFLEKNRDLLHLDSIQLLSSCVCPLPQIFASHMLTQSDKLVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPESYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLDNVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYQARRSLKELRGGITTLQSFIRGGKTRKAYSALLKRHRAAVIIQKRMKAVFARNRMRTISSAAIVIQAVIRGWLVRRCSGDIGFLKSGDTKMKESDEVLVKSSFLAELQRRVLKAEAALREKDEENDILHQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDERDYSGDVGGNQKRQESNGARSTSAGLSVISRLAEEFEHRSQVFGDDAKFLVEVRSGQVEASLNPDQELRRLKQMFEAWKKDYGARLRETKIILNKLGSEDGALEKMKKKWWGRRNSTRIN 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0980 1191 SMART MYSc_2a 186 867 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu2g0980 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 914 IPR027417 -
Ssu2g0980 1191 Gene3D - 799 867 - -
Ssu2g0980 1191 CDD MYSc_Myo8 206 854 IPR036022 -
Ssu2g0980 1191 Gene3D Myosin VI head, motor domain, U50 subdomain 437 734 - -
Ssu2g0980 1191 ProSiteProfiles IQ motif profile. 940 969 IPR000048 GO:0005515
Ssu2g0980 1191 Pfam Myosin head (motor domain) 194 854 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu2g0980 1191 Gene3D Kinesin motor domain 195 795 IPR036961 -
Ssu2g0980 1191 MobiDBLite consensus disorder prediction 1059 1095 - -
Ssu2g0980 1191 Gene3D - 562 756 - -
Ssu2g0980 1191 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 139 188 IPR004009 GO:0003774|GO:0005524|GO:0016459
Ssu2g0980 1191 PANTHER MYOSIN 21 1191 - -
Ssu2g0980 1191 Pfam IQ calmodulin-binding motif 895 911 IPR000048 GO:0005515
Ssu2g0980 1191 Pfam IQ calmodulin-binding motif 942 958 IPR000048 GO:0005515
Ssu2g0980 1191 Pfam IQ calmodulin-binding motif 872 889 IPR000048 GO:0005515
Ssu2g0980 1191 Gene3D - 376 435 - -
Ssu2g0980 1191 MobiDBLite consensus disorder prediction 1080 1095 - -
Ssu2g0980 1191 Gene3D - 870 918 - -
Ssu2g0980 1191 Gene3D - 919 960 - -
Ssu2g0980 1191 SMART iq_5 890 912 IPR000048 GO:0005515
Ssu2g0980 1191 SMART iq_5 867 889 IPR000048 GO:0005515
Ssu2g0980 1191 SMART iq_5 916 938 IPR000048 GO:0005515
Ssu2g0980 1191 SMART iq_5 939 961 IPR000048 GO:0005515
Ssu2g0980 1191 ProSiteProfiles IQ motif profile. 870 897 IPR000048 GO:0005515
Ssu2g0980 1191 ProSiteProfiles IQ motif profile. 891 920 IPR000048 GO:0005515
Ssu2g0980 1191 PRINTS Myosin heavy chain signature 278 303 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu2g0980 1191 PRINTS Myosin heavy chain signature 320 347 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu2g0980 1191 PRINTS Myosin heavy chain signature 605 633 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu2g0980 1191 PRINTS Myosin heavy chain signature 222 241 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu2g0980 1191 PRINTS Myosin heavy chain signature 552 580 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu2g0980 1191 Coils Coil 986 1034 - -
Ssu2g0980 1191 ProSiteProfiles Myosin motor domain profile. 192 866 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu2g0980 1191 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 21 1191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0980 Ssu-Chr2 47151101 47172553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0980 21 1189 Myosins gene family AT1G50360 73.868 0.0 1755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0980 - K10357 gmx:100781736 2169.43