Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0968 ATGGCGGGAGTGAGGGAACAGGACCGGTACATGCCAATAGCGAACGTGATAAGGATCATGCGAAGGATTCTGCCGGGGCACGCGAAGATCTCGGACGACGCGAAGGAGACGATGCAAGAGTGCGTGTCTGAGTACATCAGCTTCATCACGGCGGAAGCGAACGAGCGGTGCCAGCGCGAGCAACGGAAGACGGTAACCGCAGAGGACGTGCTGTGGGCAATGGGGAGGCTCGGCTTCGACGACTCCGTTCACCCTCTCGCCCTTTTCCTTCACCGCTACCGCGAAAGTGGAGGAGAACCTGCTTCTGTGAGACGCGCTTCTGCCTCTGCCTCTGCTCTGCACCCGCACCCGCACCCGCACACACCTTATTCTCATGCTTTTGGAATGTTTGACTTTGACCCATCGCAAGGGCTCTACAGGGATGATGCCTCAGCCTCTGGTTCTCGCAGTTTTATTGCCGGCTTTGATCCTTATGCTAATGTCAGACGTGATCCCCTGTGA 501 0.5729 MAGVREQDRYMPIANVIRIMRRILPGHAKISDDAKETMQECVSEYISFITAEANERCQREQRKTVTAEDVLWAMGRLGFDDSVHPLALFLHRYRESGGEPASVRRASASASALHPHPHPHTPYSHAFGMFDFDPSQGLYRDDASASGSRSFIAGFDPYANVRRDPL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0968 166 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 74 IPR003958 -
Ssu2g0968 166 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 113 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ssu2g0968 166 SUPERFAMILY Histone-fold 7 103 IPR009072 GO:0046982
Ssu2g0968 166 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 113 - -
Ssu2g0968 166 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Ssu2g0968 166 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Ssu2g0968 166 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Ssu2g0968 166 Gene3D Histone, subunit A 2 116 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0968 Ssu-Chr2 46871958 46872458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0968 4 113 CCAAT-HAP3 Transcription Factor Family AT5G47670 77.273 6.31e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu2g0968 CBFD_NFYB_HMF 6.5e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0968 K08065 - gmx:100811633 251.906