Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0952 ATGGATTTGGACCAGTGGATCTCCAAGGTGAAGGATGGCCAGCACCTTCTTGAAGACGAGCTTCAACTTCTTTGCGAATATGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTGAATAGTCCAGTGACTGTTTGTGGTGATATTCACGGTCAGTTTCATGATCTAATGAAACTTTTCCAGACCGGGGGTCATGTGCCGGAgacaaattacatttttatgGGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTGTTCACCATCCTTTTACTTCTAAAAGCTAGATACCCAGCTAATATTACCCTTCTACGTGGAAACCATGAAAGTAGACAACTAACGCAGGTCTATGGATTTTATGATGAATGCCAGAGGAAGTATGGGAATGCTAATGCTTGGCGATATTGTACAGATGTTTTTGACTATCTTACACTTTCTGCAATTATAGACGGAACTGTGCTTTGTGTTCATGGTGGTCTTTCTCCGGACATTCGAACAATCGATCAGATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGGCCATTTTGTGATCTGATGTGGAGTGATCCTGAAGATATTGAAACGTGGGCAGTCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTGACTTCTGAGTTCAATCACATAAACAATCTTGATCTTGTTTGTCGAGCACACCAACTCGTTCAAGAAGGTCTCAAGTATATGTTCCAAGATAAAGGCCTTGTAACTGTATGGTCTGCACCTAATTACTGTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGGAGAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAAATGAGAGGCCCCCGGACAGGCgagaGATGA 903 0.4153 MDLDQWISKVKDGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQMRGPRTGER 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0952 300 Gene3D - 1 297 IPR029052 -
Ssu2g0952 300 ProSitePatterns Serine/threonine specific protein phosphatases signature. 107 112 IPR006186 GO:0016787
Ssu2g0952 300 PRINTS Serine/threonine phosphatase family signature 249 265 IPR006186 GO:0016787
Ssu2g0952 300 PRINTS Serine/threonine phosphatase family signature 141 167 IPR006186 GO:0016787
Ssu2g0952 300 PRINTS Serine/threonine phosphatase family signature 170 197 IPR006186 GO:0016787
Ssu2g0952 300 PRINTS Serine/threonine phosphatase family signature 73 100 IPR006186 GO:0016787
Ssu2g0952 300 PRINTS Serine/threonine phosphatase family signature 226 246 IPR006186 GO:0016787
Ssu2g0952 300 PRINTS Serine/threonine phosphatase family signature 106 130 IPR006186 GO:0016787
Ssu2g0952 300 PRINTS Serine/threonine phosphatase family signature 44 71 IPR006186 GO:0016787
Ssu2g0952 300 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 298 - -
Ssu2g0952 300 SUPERFAMILY Metallo-dependent phosphatases 2 286 IPR029052 -
Ssu2g0952 300 Pfam Calcineurin-like phosphoesterase 44 235 IPR004843 GO:0016787
Ssu2g0952 300 CDD MPP_PP2A_PP4_PP6 2 285 - -
Ssu2g0952 300 SMART pp2a_7 16 287 IPR006186 GO:0016787
Ssu2g0952 300 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0952 Ssu-Chr2 46653265 46669638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0952 43 221 Calmodulin-binding Proteins AT5G63870 37.500 1.40e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0952 K15498 - qlo:115968864 627.476