Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0934 ATGGGAGGCAAAGGAGGGGTTGCGATGAaggataagaagaagaagaagaacaagaacGCAAAAGCAAAATCGGGGGGTTTTGAGTCCCTTGGTCTGAATCCGAATGTGTTCAAAGGAATCAAGCGCAAAGGGTACAAAGTGCCCACTCCAATTCAGCGGAAGACCATGCCCCTCATCCTTTCCGGCTCCGACGTGGTTGCCATGGCTCGCACTGGCTCTGGCAAAACGGCAGCGTTTCTTGTCCCCATGCTTCACCGCCTCAACCAGCATCTCCCTCAGTCTGGAGTTAGAGCCCTCATTTTGTCCCCCACTAGAGACTTGGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGGCCACTTCACAGACCTTCGTGTTAGTTTGTTAGTTGGCGGAGATAGTATGGAAAGTCAGTTTGAGGAGTTAGCTCATAGTCCTGACATTATAATTGCCACTCCTGGTAGGCTCATGCACCATTTGTCTGAGGTTGATGACATGTCCTTGCGCAGTGTCGAGTATGTTGTTTTCGACGAGGCTGATTGTTTGTTTGGCATGGGTTTCGCCGAGCAGTTGCATAAAATTCTTGCTCAGCTTGGGGAGAACCGGCAGACCTTGCTTTTCAGTGCCACATTACCCAGTGCACTTGCTGAGTTTGCTAAGGCTGGTTTGAGGGACCCTCGGCTTGTCCGCCTCGATTTGGAAACTAAAATTAGCCCTGACTTGAAGCTTGCCTTCTTCACTTTGAGGCAGGAGGAGAAGTACGCGGCTTTGCTGTATTTGATCAGGGAGCATATTGGTTCTGATCAGCAGACATTGATTTTTGTATCCACGAAACATCACGTGGAGTTTCTCAACGTTTTGTTTCGTGAAGAGGGTATTGAGCCGTCTGTGTGTTATGGCGACATGGATCAAGATGCTCGCAAAATCCATGTGTCAAGGTTTAGGGCTAGAAAGACAATGTTGTTGATTGTGACAGATGTTGCAGCTCGGGGCATTGATATTCCATTACTTGATAATGTTATCAATTGGGACTTTCCCCCCaagcctaaaatatttgtccaTAGAGTTGGAAGGGCTGCAAGGGCTGGTCGAACTGGTGCTGCATATTCTTTTGTGACTTCTGAGGATATGGCTTACCTTTTGGATCTTCACTTGTTTCTTTCAAAACCAATCAAAGCTGCTCCCACTGAAGAAGAGGTTTTGCGGGATATGGATGGAGTAATGTCAAGAAATGACCAGGCAATGGCGAATGGAGAAACCATTTATGGTCGTTTCACCCAAAAAGTCATTGACCTTGTTTCAGACAGAGTTAGGGAAATTATTGATACTTCTGCGGAACTGGAATCATTGCAGGGAACCTGTAAAAATGCATTTCGtttatattcaaaaacaaaacCCTTACCCTCAAAGGAGTCCATTAGAAGAGTTAAGGATTTGCCTCATGAAGGGCTGCATCCAATGTTTATGAATGTGTTGGAAACGGGGGAGTTAAGAGCGCTTGCATTTTCTGagcatttgaaaaagtttagGCCAAAGCAGACCATTTTGGAAGCTGAAGGGGAAGCAGCTAAATCAAAGCATCTACAGGGGCCTTCTGGCCAATGGGTTgatgtgatgagaaaaaaaagagcCATTCATgagaatattataaatttggttcATGAACAGCAGCAGTCTAAGAGTAATAAGGAAAAGGAGGAAATTCAATCGGAAATCAGTCCTTCCAtggagaaaggaagaaaagCAGCACGTGGTTCTAAGAGAAAGCCACAAAGTTTCAAGGATGAGGATCACTATATAAGTTCAATACCAAAAAATCAACATATGGAGGCTGGCCTTTCAGTAAAAGCTAATGAAGACTTTGCTTCAAATAGattgGAAGCAGCTGTCCTTGATCTAGTGGCAGATGATGGTGCTGGCATTCAGAAACAAAGATCTATGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGACCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACGAAGGCCACCAAGACTGGTATATATAAGAAGTGGAAAGAACGCTCACACGGTAAGATATCTCTTAAAGGGACAAATAGTGATGGTGGTCCTCAGGAATCAACAAGTTTGGCAGGATCTTACCAAAGAGGTCGTAGGAATTTTAAAGGCAGCAAGAAGCAGCACTCAATGCCCAATGCTCATGTGCGTTCGGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGGGAGAAAAAGGCCAACAGgatttcttatataaagagcAAGTCGACAAAGGGTAACAAGTTTGgtagaaatggtaaaaaaagaaaaggcaaatag 2358 0.4152 MGGKGGVAMKDKKKKKNKNAKAKSGGFESLGLNPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMLHRLNQHLPQSGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAHSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHKILAQLGENRQTLLFSATLPSALAEFAKAGLRDPRLVRLDLETKISPDLKLAFFTLRQEEKYAALLYLIREHIGSDQQTLIFVSTKHHVEFLNVLFREEGIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGAAYSFVTSEDMAYLLDLHLFLSKPIKAAPTEEEVLRDMDGVMSRNDQAMANGETIYGRFTQKVIDLVSDRVREIIDTSAELESLQGTCKNAFRLYSKTKPLPSKESIRRVKDLPHEGLHPMFMNVLETGELRALAFSEHLKKFRPKQTILEAEGEAAKSKHLQGPSGQWVDVMRKKRAIHENIINLVHEQQQSKSNKEKEEIQSEISPSMEKGRKAARGSKRKPQSFKDEDHYISSIPKNQHMEAGLSVKANEDFASNRLEAAVLDLVADDGAGIQKQRSMYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGIYKKWKERSHGKISLKGTNSDGGPQESTSLAGSYQRGRRNFKGSKKQHSMPNAHVRSEIKDMDQIRKEREKKANRISYIKSKSTKGNKFGRNGKKRKGK 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0934 785 MobiDBLite consensus disorder prediction 558 581 - -
Ssu2g0934 785 Gene3D - 6 232 IPR027417 -
Ssu2g0934 785 Gene3D - 244 465 IPR027417 -
Ssu2g0934 785 Pfam DBP10CT (NUC160) domain 632 693 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Ssu2g0934 785 MobiDBLite consensus disorder prediction 555 598 - -
Ssu2g0934 785 CDD SF2_C_DEAD 251 356 - -
Ssu2g0934 785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 381 IPR027417 -
Ssu2g0934 785 MobiDBLite consensus disorder prediction 694 785 - -
Ssu2g0934 785 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 229 IPR014001 -
Ssu2g0934 785 Pfam Helicase conserved C-terminal domain 253 363 IPR001650 -
Ssu2g0934 785 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 253 402 IPR001650 -
Ssu2g0934 785 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 11 782 - -
Ssu2g0934 785 CDD DEADc_DDX54 25 230 - -
Ssu2g0934 785 SMART helicmild6 282 363 IPR001650 -
Ssu2g0934 785 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 11 782 - -
Ssu2g0934 785 SMART DBP10CT_2 632 694 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Ssu2g0934 785 Pfam DEAD/DEAH box helicase 49 216 IPR011545 GO:0003676|GO:0005524
Ssu2g0934 785 MobiDBLite consensus disorder prediction 1 26 - -
Ssu2g0934 785 MobiDBLite consensus disorder prediction 737 763 - -
Ssu2g0934 785 MobiDBLite consensus disorder prediction 701 721 - -
Ssu2g0934 785 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 53 IPR014014 GO:0003724
Ssu2g0934 785 SMART ultradead3 44 251 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0934 Ssu-Chr2 46429372 46437566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0934 19 396 Eukaryotic Initiation Factors Gene Family AT1G72730 32.105 5.27e-59 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0934 K14808 - gmx:100806274 1384.39