Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0913 ATGGAACTTAATGCCCCAAACATTCCCCCTTTTGAAATATCTCATTCTCGACCCCAAAGGATTCGTCCCAAAAGCGTCCAATTTGATGATACCATCCTCTTACATGATGACAATGCCAGCCTCATCTATGTTAATGATCCCATCAAGACTAATGAAAAGTATGAGTTTTCCGGGAATGAGATCCGAACCAGCAAATACACTCTTCTCACCTTCTTGCCCAAGAATCTTTTCATTCAGTTTCACCGGGTTGCTTATCTCTATTTCCTTGCCATTGCCGCTCTCAATCAGCTTCCTCCACTCGCCGTTTTCGGGCGAACCGTGTCCCTTTTCCCCCTTCTGTTTGTGCTTTGCATCACTGCTATCAAGGATGCTTATGAGGATTGGCGCAGGCACAGGtcggataaaaaagaaaacaatcgAGAGAGTCTGGTTCTTCAATCTGCTCAGTTCCACCCCATGAAATGGAAAGAAATACAGGCTGGCAATGTTGTTAAAATCTTTGCCGATGAGATGATTCCCGCTGACATGGTCTTGTTGGGGACAAGTGATCCAAGTGGGATTGCCTATATTCAGACAATGAATTTGGATGGAGAATCTAATTTGAAGACAAGGTATGCTAAGCAGGAAACAGCTTCAACGGTGTTGCCAGATGCATGTGCTGTCTCTGGAGTTATTAGATGTGAGCAACCTAATCGGAATATTTATGAGTTCACCGCCAACATGGAGTTCAATGGGCATAAGTTTCCCCTTAACCAGTCAAACATTGTGCTGCGTGGTTGCGTGCTGAAGAACACGGATTGGATAATTGGCGTGGTGGTTTATGCAGGACAGCAAACAAAAGCAATGTTGAACAGCGCAGCTTCCCCTTCCAAGAGAAGCAAACTGGAAAGTTACATGAACAGAGAAACTTTTTGGTTgtcagtttttctttttatcatgtgCGCAGTTGTGGCCCTTGGGATGGGTCTCTGGCTGGTACGCCACAAGGATCAGCTTGATACCTTGCCTTACTACAGAAAAACATACTTCAACAATGGGCCGGATAAGGGAAAGAAATACCGGTATTATGGGATACCGATGGAAACATTCTTCTCCTTTTTGAGTTCTATTATAGTGTTTCAGATAATGATACCAATATCTCTTTACATCACAATGGAGTTGGTTCGTTTGGGTCAGTCGTACTTCATGATAGAGGACAGGGATATGTATGATGCTAACTCTGGATCAAGGTTCCAGTGTagatcattaaatattaatgaagaTTTGGGTCAAATACGCTATGTGTTTTCAGACAAGACAGGAACATTAACAGAAAACAAAATGGAGTTTCAGAGAGCTAGTGTATATGGAAAGAACTATGGGTGCTCCTTGCTTATGGCAGATAACAAGACagCAGCAGCCGATAGTGGTAAACGAAGATGGAAGCTCAAATCTGAAATTGCTGTTGATTCTGAACTAACAGCATTGTTGCAGAAAGACTCAAATGGAGATGAAAGAATTACTGCTCATGAGTTTTTCCTTACATTGGCTGCTTGTAATACTGTGATCCCCATTATTAGTAGCAGTACATTTTCCAGTTGTGGAAATGGAGAATCAAATGAAGACATAGAAAGCATTGATTACCAGGGAGAATCTCCTGATGAACAAGCTCTAGTTTCTGCTGCCTCTGCATATGGATATACTCTATGTGAGCGAACATCGGGACACATTGTTATTGACGTTAATGGTCAGAAACTCAGGTTGGATGTATTGGGCATGCATGAGTTTGATAGTGTGCGAAAGAGGATGTCTGTTGTTATCCAGTTTCCTGACAATGTTGTTAAGGTGTTGGTTAAAGGCGCTGACACTTCAATGTTTAGCATTTTAGCACATGACAACGAAGGCAACAATGGCATACGGCATGAAACTCAGAGTCATTTAAGTGAATATTCTTTGCAAGGTTTACGAACACTTGTAGTTGCCTCCAGGGATCTTTCAGATGCCGAACTTGAGGAGTGGCAAAGCATGTATGAAGATGCGAGCACTTCATTGACTGATCGAGCTGCAAAACTGCGTCAAACAGCGGCTCTTATAGAATGCAACCTAAAGCTACTTGGAGTAACTGCAATTGAGGACAAGCTACAGGAGGGTGTACCAGAAGCCATTGAGTCCCTGCGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAGCAAGAGACCGCAATTTCAATTGGTCTTTCTTGTAAACTTTTGAGTGCAGATATGCAGCAGATAATTATAAATGGCACTTCAGAGGTTGAGTGCAGAAATCTCTTGGCTGATGCTAAAGCGAAGTATGGTGTGAGATCTTCAAGTAGAGGACATCAGAATCTGAAGTGCAAAACTGATTCTAGATATGGTGGCCATGATATTCCCAATGATACAAAATCCTTGAGCATGCCCAAGTGGAATCCAGGAAAGGAAGAAGGAAGTACTGCTCCATTGGCACTCATAATTGATGGTACCAGTTTGGTTTATATTTTGGAGAAGGAACTACAGTCAGAGCTTTTCGACCTTGCAACTTCCTGTAGGGTTGTCCTATGCTGCCGTGTTGCACCCTTGCAGAAAGCAGGAATTGTTGATCTGATAAAAAGACGCACAGATGATCTGACATTAGCTATAGGTGATGGGGCAAATGATGTGTCAATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCATCAGATTTTGCTATGGGACAATTCCAGTTCTTGAAAAAATTGCTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTTGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTGTTAATGCTATTCTGGTATATATTATGCACTGCTTTTTCTACAACTTCTGCATTGACAGATTGGAGTAGTGTATTATACTCTGTGATATACACATCTATCCCTACTATCATTGTTGGTGTTCTGGACAAAGACTTGAGTCATAGGACACTCTTGCAGTATCCAAAATTGTATGGTGCAGGTCACCGGCACGAGGCTTACAATATGCAATTATTTTGGATAACAATGATTGACACACTATGGCAGAGCCTTGTTCTCTTCTACATTCCCCTATTCACTTATAAGGATAGCACAATTGATATATGGAGCATGGGCAGTTTATGGACAATTTCAGTTGTTATCCTTGTAAATGTACACCTGGCTATGGACATTAACCAGTGGGAACTAATTAGTCATGTTGCTGTATGGGGATCAATAATCATTACATATGGTTGTGTCGTGGTATTGGATTCTATACCTGTCTTTCCCAATTACGGGACTATTTATCATTTGGCAAGGTCCCCTACATATTGGATGACAATTTTGCTTATAATAATTGTGGCATTGCTACCTCGCTTTTCTTGCAAAGCTGTTTATCAAATCTTTTGTCCTTCAGATATCCAGATAGCTAGAGAAGCTGAGACAATGAGAAAACAGCATGATGATGTGCAGTCAAGGCTACCAGTTTCCAATTAA 3531 0.4126 MELNAPNIPPFEISHSRPQRIRPKSVQFDDTILLHDDNASLIYVNDPIKTNEKYEFSGNEIRTSKYTLLTFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCITAIKDAYEDWRRHRSDKKENNRESLVLQSAQFHPMKWKEIQAGNVVKIFADEMIPADMVLLGTSDPSGIAYIQTMNLDGESNLKTRYAKQETASTVLPDACAVSGVIRCEQPNRNIYEFTANMEFNGHKFPLNQSNIVLRGCVLKNTDWIIGVVVYAGQQTKAMLNSAASPSKRSKLESYMNRETFWLSVFLFIMCAVVALGMGLWLVRHKDQLDTLPYYRKTYFNNGPDKGKKYRYYGIPMETFFSFLSSIIVFQIMIPISLYITMELVRLGQSYFMIEDRDMYDANSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFQRASVYGKNYGCSLLMADNKTAAADSGKRRWKLKSEIAVDSELTALLQKDSNGDERITAHEFFLTLAACNTVIPIISSSTFSSCGNGESNEDIESIDYQGESPDEQALVSAASAYGYTLCERTSGHIVIDVNGQKLRLDVLGMHEFDSVRKRMSVVIQFPDNVVKVLVKGADTSMFSILAHDNEGNNGIRHETQSHLSEYSLQGLRTLVVASRDLSDAELEEWQSMYEDASTSLTDRAAKLRQTAALIECNLKLLGVTAIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLSADMQQIIINGTSEVECRNLLADAKAKYGVRSSSRGHQNLKCKTDSRYGGHDIPNDTKSLSMPKWNPGKEEGSTAPLALIIDGTSLVYILEKELQSELFDLATSCRVVLCCRVAPLQKAGIVDLIKRRTDDLTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKKLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVLYSVIYTSIPTIIVGVLDKDLSHRTLLQYPKLYGAGHRHEAYNMQLFWITMIDTLWQSLVLFYIPLFTYKDSTIDIWSMGSLWTISVVILVNVHLAMDINQWELISHVAVWGSIIITYGCVVVLDSIPVFPNYGTIYHLARSPTYWMTILLIIIVALLPRFSCKAVYQIFCPSDIQIAREAETMRKQHDDVQSRLPVSN 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0913 1176 SFLD C1.7: P-type atpase like 413 933 - -
Ssu2g0913 1176 SUPERFAMILY HAD-like 416 926 IPR036412 -
Ssu2g0913 1176 Gene3D - 695 922 IPR023214 -
Ssu2g0913 1176 Gene3D - 540 677 IPR023299 GO:0000166
Ssu2g0913 1176 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 37 1171 - -
Ssu2g0913 1176 Pfam Phospholipid-translocating ATPase N-terminal 42 107 IPR032631 -
Ssu2g0913 1176 Gene3D - 412 425 - -
Ssu2g0913 1176 SUPERFAMILY Calcium ATPase, transduction domain A 140 281 IPR008250 -
Ssu2g0913 1176 Gene3D - 439 475 IPR023299 GO:0000166
Ssu2g0913 1176 Gene3D - 115 285 - -
Ssu2g0913 1176 CDD P-type_ATPase_APLT_Dnf-like 58 1042 - -
Ssu2g0913 1176 Pfam E1-E2 ATPase 140 387 - -
Ssu2g0913 1176 ProSitePatterns E1-E2 ATPases phosphorylation site. 431 437 IPR018303 -
Ssu2g0913 1176 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 1148 IPR023298 -
Ssu2g0913 1176 PRINTS P-type cation-transporting ATPase superfamily signature 882 901 - -
Ssu2g0913 1176 PRINTS P-type cation-transporting ATPase superfamily signature 429 443 - -
Ssu2g0913 1176 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 56 1157 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Ssu2g0913 1176 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 692 746 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu2g0913 1176 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 852 968 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu2g0913 1176 SFLD p-type atpase 413 933 IPR044492 -
Ssu2g0913 1176 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 435 711 IPR023299 GO:0000166
Ssu2g0913 1176 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 37 1171 - -
Ssu2g0913 1176 Pfam Phospholipid-translocating P-type ATPase C-terminal 910 1150 IPR032630 -
Ssu2g0913 1176 Pfam Cation transport ATPase (P-type) 523 619 - -
Ssu2g0913 1176 Gene3D - 426 438 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0913 Ssu-Chr2 46036334 46041402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0913 19 1161 Primary Pumps ATPases AT5G04930 55.882 0.0 1320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0913 K14802 - gmx:100788740 2163.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0944 3 22400512 22406200 Ssu2g0913 2 46036334 46041402 PCT