Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0912 ATGGATCATAGAAAGGCAATAAAGGAGCTTGAGAGAGGGCGTGAGTTTGCTAATCAACTTCGACAAGTGATTAATGGACATGACGAGTCAGCAACGGCCACCCCATCTGTCCAGGATCTTGTGAAGAACGTGCTCAACTCCTTCTCCAACACCCTCTTCCTCTTGGACAAATATCCCACTTACGAATCCCATGAGGTTTCCCAGATGCAACAAAGGGACTCTTGCTTGATCGCTCCCACTAAATCTGAGGACTCTCAAGAAAGTTGCAAGAGTTTCCCCAGTAAGAACAGAAGAGGGTGCTACAAGAGAAAAATAAATACACAAGAATGGGAAAAGGTGTCGGAAACTCCATTAGTTGATGGCCACCAATGGAGAAAGTATGGCCAAAAACCGATCCTCAAAGCCAAATACTCGAGGAACTACTACCGGTGCACTCACAAGTATGATCAGAATTGTCAAGCAACAAAACAAGTGCAGAGAATTCAAGAGGAGCCTCCCTTGTATAAGACCACCTATTTTGGCCACCACACATGCAATGACTTTCTAAACTCTGAAATCATACTTGATTCCAATTCTCCTCCTTACACTTCCATATTGCTTAGCTTTAACAGCACTTTCCCTACTCCAACCAAACAAGAGTGCCCCTTTTTACCATCCTCATCATCTTTATTCTCACCATCAGTGAACAAAGAGCAAGTGAGTCCCTCATCTTCCTCAGATGATTACTTGCTCTCCCCGAAACCCACCTTAGATGATTCTTCAAGGCATAATAATGTCACTCTATCACCCGATCACTGGGATGTCATGTCTGTTGTCTTGTGTGATTCTGTTGATCTTGATGATGTCAACCTTTTGTTGGATTTTTGA 867 0.4337 MDHRKAIKELERGREFANQLRQVINGHDESATATPSVQDLVKNVLNSFSNTLFLLDKYPTYESHEVSQMQQRDSCLIAPTKSEDSQESCKSFPSKNRRGCYKRKINTQEWEKVSETPLVDGHQWRKYGQKPILKAKYSRNYYRCTHKYDQNCQATKQVQRIQEEPPLYKTTYFGHHTCNDFLNSEIILDSNSPPYTSILLSFNSTFPTPTKQECPFLPSSSSLFSPSVNKEQVSPSSSSDDYLLSPKPTLDDSSRHNNVTLSPDHWDVMSVVLCDSVDLDDVNLLLDF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0912 288 MobiDBLite consensus disorder prediction 225 257 - -
Ssu2g0912 288 SUPERFAMILY WRKY DNA-binding domain 115 179 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu2g0912 288 Gene3D WRKY domain 101 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu2g0912 288 Pfam WRKY DNA -binding domain 120 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g0912 288 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 282 IPR044810 GO:0003700
Ssu2g0912 288 SMART WRKY_cls 118 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g0912 288 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 282 - -
Ssu2g0912 288 ProSiteProfiles WRKY domain profile. 113 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0912 Ssu-Chr2 46012478 46013822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0912 5 179 WRKY Transcription Factor Family AT3G56400 41.899 6.48e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu2g0912 WRKY 5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0912 - - gmx:102670495 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0945 3 22423649 22425256 Ssu2g0912 2 46012478 46013822 PCT