Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0907 ATGTACCAAGGCCCTCGAGTTTCCAGCGTTTACTGGCCGTATGCTTGGCTTCAGAGCAATAATTTCGGTAATGGTAATGGTAGATCCACTTTCGACGATAGCAGGGTTGTTGCACTCGACGATTTCGGCAACGTGGTTTCTTCCGATAACTTCACTTTCAGAACAAGTGATTACGGGACGGTGCTTCAGCGGAGATTGACCCTCGACCACGACGGCAATGTTCGTGTGTATAGCATGAAAGACGGAGAAGAGAAGTGGTCGGTGTCGGGGCAATTTCGGCCACAACCTTGTTTTATTCACGGGATTTGTGGACCCAATAGCTATTGCAGTCATGAGCCAAGCAGTGGAAGAAAGTGTTCGTGCCTTCCAgGTCACAGATGGGTTGATAGTCGAGACTGGTCTCAAGGTTGTGTACCGAATTTTCGACATTGGTGCAACAACACGGAGCAAGAGTCTCGCTTCCTGCCCTTACCCGAATTCGATTTTTACGGATACGACTATGGCCTCTATCAGAATCACACATACGAACAATGTGTGAATCTGTGCTTGGGGTTGTGTGAATGCAAAGGGTTTCAACACAGTTTTCAGGATCAAGGTGGTCTTGGTAGTCAGTGCTACCTGAAGAAGAAGTTGCTAAATGGTCATCATTCACCCGGTTTCAAGGGATCATTCCTGTTGCGACTGCCTTTGTCCCATGATGACAATGAGAACCACATCCAAAATGGCTTGGTTTGCGGGGGAAATAGTGGACGAGCCGAAGTACTAGAGAGACCGTATGTGGAACAAAAAGAGAATGGATCGGTTAAGTTCATGCTGTGGTTTGCGAGTGCCTTGGGAGGAATTGAGGTCGTGTGCATCTTTCTGGTGTGGTGTTTCCTGTTTAGGAATAATGGGACATTGCACTCCGGAGCTGACAAACAAGGTTATGTTCTTGCGGCGGCAGCAGGGTTTAGGAAATTCAGTTACACTGAACTGAAACATGCCACCAAAGGTTTCAGTCAAGAGATTGGAAGGGGTGCTGGAGGTACTGTGTATAAGGGTGTCTTGTCTGATAATCGAGTTGTGGCAATAAAGCGACTGCATGAAGTAGCGAACCAAGGAGAAAGTGAGTTCCTGGCTGAAGTGAGCATCATTGGAAGGCTTAACCACATGAACTTAATTGGCATGTTGGGGTATTGTGCAGAGGGAAAGTATAGGTTGTTGGTTTATGAGTACATGGAGAATGGTTCTTTAGCTCAGAACCTCTCATCGAATTCAAATGTACTTGACTGGAGTAAGAGGTATAATATTGCACTGGGAACGGCAAAGGGTATGGCCTACTTGCATGAAGAATGCTTGGAGTGGATTTTGCATTGTGATATTAAGCCCCAAAATATACTTCTTGACTCTGATTATCAACCCAAGGTAGCAGATTTTGGCTTGTCTAAGCTACTAAACAGGAGCAACCTCGATAATTCGACCTTCTCAAGAATAAGAGGAACAAGAGGTTACATGGCACCGGAATGGGTTTTCAACTTGCCAATCACTTCCAAGGTCGATGTTTACAGCTATGGAATTGTTGTCTTGGAGATGATAACTGGAAGGAGCCCAACAACAGGTATCCAAATCACAGAATTAGAAGCAGAGTCACCTCATCACGAGAGGTTGGTGACATGGGTGAGGGAGAAAAGGAGGAAAGGATCAGAAGTGGGATCATCTTGGGTGGATCAAATCGTTGACCCTGTTTTGGGATCAAACTATGACATGAATGAAATGGAGATATTGGCAACGGTGGCTTTGGAATGTGTAGAGGAAGAGAAAGACGCGAGACCCAGCATGAGTCAAGTTGCGGAGAGGCtccaaaatcatgaaaatgatTCTTGA 1863 0.4541 MYQGPRVSSVYWPYAWLQSNNFGNGNGRSTFDDSRVVALDDFGNVVSSDNFTFRTSDYGTVLQRRLTLDHDGNVRVYSMKDGEEKWSVSGQFRPQPCFIHGICGPNSYCSHEPSSGRKCSCLPGHRWVDSRDWSQGCVPNFRHWCNNTEQESRFLPLPEFDFYGYDYGLYQNHTYEQCVNLCLGLCECKGFQHSFQDQGGLGSQCYLKKKLLNGHHSPGFKGSFLLRLPLSHDDNENHIQNGLVCGGNSGRAEVLERPYVEQKENGSVKFMLWFASALGGIEVVCIFLVWCFLFRNNGTLHSGADKQGYVLAAAAGFRKFSYTELKHATKGFSQEIGRGAGGTVYKGVLSDNRVVAIKRLHEVANQGESEFLAEVSIIGRLNHMNLIGMLGYCAEGKYRLLVYEYMENGSLAQNLSSNSNVLDWSKRYNIALGTAKGMAYLHEECLEWILHCDIKPQNILLDSDYQPKVADFGLSKLLNRSNLDNSTFSRIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMITGRSPTTGIQITELEAESPHHERLVTWVREKRRKGSEVGSSWVDQIVDPVLGSNYDMNEMEILATVALECVEEEKDARPSMSQVAERLQNHENDS 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0907 620 Pfam Protein kinase domain 333 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0907 620 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 1 620 - -
Ssu2g0907 620 Pfam S-locus glycoprotein domain 47 125 IPR000858 GO:0048544
Ssu2g0907 620 SUPERFAMILY Protein kinase-like (PK-like) 314 613 IPR011009 -
Ssu2g0907 620 ProSiteProfiles Protein kinase domain profile. 330 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0907 620 CDD STKc_IRAK 336 615 - -
Ssu2g0907 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Ssu2g0907 620 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Ssu2g0907 620 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 620 - -
Ssu2g0907 620 Gene3D Transferase(Phosphotransferase) domain 1 406 620 - -
Ssu2g0907 620 MobiDBLite consensus disorder prediction 600 620 - -
Ssu2g0907 620 ProSiteProfiles PAN/Apple domain profile. 145 229 IPR003609 -
Ssu2g0907 620 SMART serkin_6 330 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0907 620 Gene3D Phosphorylase Kinase; domain 1 299 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0907 Ssu-Chr2 45941061 45943529 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0907 320 617 Trihelix Transcription Factor Family AT5G38560 43.522 2.50e-71 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu2g0907 Pkinase 2.6e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0907 - - gmx:100808408 1104.35