LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g0905	ATGTTCATTCTCCCTCTCGTAGAGAAACTCAAAGAAGATGTAATAGTATCATCACCCAAGGGCACATTCACCGCGGGGTTTTATCCCGTAGGGGAAAATGCATACTGCTTCGCCATATGGTTCACCCAACCACCTCACACTGTTGTTTGGATGGCCAACCGGGACCAGCCAGTGAACGGAAAACGCTCAACGCTTTCCCTTCTCAAAACCGGTAACCTCGTTTTAACCGACGCGGGCCAAATCGAAGTGTGGTCCACCAACACCGTCACCTCATCGAAACAAATCCAGAACAATGGGACATTACACAAACAAGGTTATGTTCTTGCAGCTGCAACGGGGTTTAGGAAATTTAGTTACTCTGAACTGAGACAAGCCaccaaaggtttcagtgaagaGATTGGAAGGGGCGCTGGAGGTATTGTGTATAAGGGTGTCTTGTCTAATAATCAAGCTATCGCAATAAAGCGACTTCATGAAGTAGCAAACCAAGGAGAAAGTGAGTTCTTAGCTGAAGTAAGCATCATTGGAAGGCTTAACCACATGAACTTAATTGGCATGTTAGGGTATTGTGCAGAGGGAAAGTATAGGTTGCTGGTTTATGAGTATATGGAAAATGGTTCTTTAGCTCAGAACCTCTCATTGAATTCAAATGTGCTTGACTGGAGTAAAAGGTATAGCATTGCTCTTGGAATGGCAAGGGGTCTAGCCTACTTACATGAAGAATGCTTGGAATGGATTTTGCATTGTGATATTAAGCCCCAAAATATACTCCTTGACTCTGATTATCAACCCAAGGTAGCAAATTTTGGCTTGTCTAAGCTACTAAACCGAAACAACCCCAACAATTCAAGTTTCTCGAGAATAAGAGGAACAAGAGGTTACATGGCACCGGAATGGGTTTTCAACTTGTCAATCACTTCCAAGGTTGATGTTTACAGTTATGGAATTGTTGTCTTGGAGATGATAACTGGAAGGAGCCCAACCACAGGTATGcaaatcacaaaatttgaagCAGAGTCACCTCATCATGAGAGGTTGGTGACATGGGTAAGGGAGAAAAGGAAGACAGGATCAGAAGTGGGATCATCTTGGGTGGATCAAATCGTTGATGCTGCTTTGGGATCAAACTATGACATGAATGAAATGGAGATATTGGCAACGGTGGCTTTGGAATGTgtagaggaagagaaaaatgcGAGACCCAGCATGAGTCAAGTTGTCGAGAAACTGCAAAGTCAAGCAATGTTTCTTGATGGTTTGCACAAAGAATAG	1272	0.4159	MFILPLVEKLKEDVIVSSPKGTFTAGFYPVGENAYCFAIWFTQPPHTVVWMANRDQPVNGKRSTLSLLKTGNLVLTDAGQIEVWSTNTVTSSKQIQNNGTLHKQGYVLAAATGFRKFSYSELRQATKGFSEEIGRGAGGIVYKGVLSNNQAIAIKRLHEVANQGESEFLAEVSIIGRLNHMNLIGMLGYCAEGKYRLLVYEYMENGSLAQNLSLNSNVLDWSKRYSIALGMARGLAYLHEECLEWILHCDIKPQNILLDSDYQPKVANFGLSKLLNRNNPNNSSFSRIRGTRGYMAPEWVFNLSITSKVDVYSYGIVVLEMITGRSPTTGMQITKFEAESPHHERLVTWVREKRKTGSEVGSSWVDQIVDAALGSNYDMNEMEILATVALECVEEEKNARPSMSQVVEKLQSQAMFLDGLHKE	423

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g0905	423	SUPERFAMILY	alpha-D-mannose-specific plant lectins	38	101	IPR036426	-
	Ssu2g0905	423	Gene3D	Transferase(Phosphotransferase) domain 1	203	417	-	-
	Ssu2g0905	423	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	246	258	IPR008271	GO:0004672\|GO:0006468
	Ssu2g0905	423	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	9	95	-	-
	Ssu2g0905	423	ProSitePatterns	Protein kinases ATP-binding region signature.	133	155	IPR017441	GO:0005524
	Ssu2g0905	423	Pfam	D-mannose binding lectin	47	105	IPR001480	-
	Ssu2g0905	423	SMART	blect_4	7	115	IPR001480	-
	Ssu2g0905	423	CDD	STKc_IRAK	133	411	-	-
	Ssu2g0905	423	ProSiteProfiles	Protein kinase domain profile.	127	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g0905	423	ProSiteProfiles	Bulb-type lectin domain profile.	1	122	IPR001480	-
	Ssu2g0905	423	Gene3D	-	3	109	IPR036426	-
	Ssu2g0905	423	SUPERFAMILY	Protein kinase-like (PK-like)	109	410	IPR011009	-
	Ssu2g0905	423	SMART	serkin_6	127	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g0905	423	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	98	414	-	-
	Ssu2g0905	423	Pfam	Protein kinase domain	130	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g0905	423	PANTHER	SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN	98	414	-	-
	Ssu2g0905	423	PANTHER	SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN	9	95	-	-
	Ssu2g0905	423	Gene3D	Phosphorylase Kinase; domain 1	110	202	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g0905	Ssu-Chr2	45879380	45882100	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g0905	117	412	Trihelix Transcription Factor Family	AT5G38560	43.144	1.58e-73	241

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Ssu2g0905		Pkinase	8e-53	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g0905	-		-	pvu:PHAVU_010G057000g	549.28