Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0904 ATGGCCTCCTCTACATTCTTATCGGCTTTTCTTGTTTCActaattttccataattttcaGCACTCATCTTCGTTCTCCCTCTTCGTGGAGAAACTCAAAGAAGACGTAATAGGTATCATCACCCAAGGGCACATTCACCGCGGGGTTTTATCCCGTAGGGGAAAATGCATACAGCTTCGCCATATGGTTCACCCAACCACCTCACACCGTTGTTTGGATGGCCAACCGAGACTAGTCAGTGAATGGAAAACGCTCCATGCTTTCCCTTCTCAAAACCGGAATAATGGGACATTACACAAACAATGTTATGTTCTTGCAGCTGCAATGGGGTTTAGGAAATTCTGTTACTTTGAACTGAGGCAAGCCaccaaaggtttcagtgaagaGATTGGAATGGGAGCTAGAGGTACTGTGTATAAGGGTGTGTTGTCTGATAATCGAGTTGTGGCAATAAAGCGACTGCATGAAGTAGCAAACCAAGGAAAAAGTGAGTTCTTAGCTGAAGTAAGCATCATTGGAAGGCTTAACCACATGAACTTAATTGGCATGTTGAGGTATAGCATTGCTCTTGGAACGGCAAGGGGTCTGGCTTACTTGCATGAAGAATGCCTGCAGTGGATTTTGCATTGTGATATTAAGCCCCAAAATATACTTCTTGACTCTGATTATCAACTCAAGGTAGCAGATTTTGGCTTGTCTAAGCTACTAAACAGGAGCAACCTCGACAATTCAAGCTTCTCAAGAATAAGAGGAACAAGAGGTTACATGGCACCGGAATGGGTTTTCAACTTGCCAATCACTTCCAAGGTCGATGTTTACAGCTATGGAATTGTTGTCTTGGAGATGATAACCGAAAGGAGCCCAACAACAGGTATCCAAATCACAGAATTAGAAGCATAG 900 0.4178 MASSTFLSAFLVSLIFHNFQHSSSFSLFVEKLKEDVIGIITQGHIHRGVLSRRGKCIQLRHMVHPTTSHRCLDGQPRLVSEWKTLHAFPSQNRNNGTLHKQCYVLAAAMGFRKFCYFELRQATKGFSEEIGMGARGTVYKGVLSDNRVVAIKRLHEVANQGKSEFLAEVSIIGRLNHMNLIGMLRYSIALGTARGLAYLHEECLQWILHCDIKPQNILLDSDYQLKVADFGLSKLLNRSNLDNSSFSRIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMITERSPTTGIQITELEA 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0904 299 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 91 186 - -
Ssu2g0904 299 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 185 295 - -
Ssu2g0904 299 ProSiteProfiles Protein kinase domain profile. 124 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0904 299 Gene3D Phosphorylase Kinase; domain 1 106 186 - -
Ssu2g0904 299 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 185 295 - -
Ssu2g0904 299 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Ssu2g0904 299 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 91 186 - -
Ssu2g0904 299 Gene3D Transferase(Phosphotransferase) domain 1 187 298 - -
Ssu2g0904 299 SUPERFAMILY Protein kinase-like (PK-like) 106 295 IPR011009 -
Ssu2g0904 299 SMART serkin_6 124 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0904 299 Pfam Protein kinase domain 187 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0904 299 Pfam Protein kinase domain 127 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0904 Ssu-Chr2 45845407 45847961 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0904 114 293 Trihelix Transcription Factor Family AT5G38560 42.009 7.47e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu2g0904 Pkinase 1.7e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0904 - - vun:114167186 344.739