Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0902 ATGATAATGGCCTCGTCCACACTCTTTTTGGCTTTTCTTGTTCCCctaatttttcatacttttcaGCACTCATCTTCCTTCTCCCTCTCCGTTGACAACCTCAAAGAAGACGTAATAGTATCATCTCCCAAAGGCACATTCACTGCAGGGTTTTACCCCGTAGGCGGAAACGCTTACAGCTTCGCCATATGGAATAATAGGAAGTTACCCTCGGGTGCTGACAAACAAGGCTATGTTCTTGCAGCGGCAGCGGGGTTTCGGAAATTCAGTTACTCTGAACTGAAACATGCCACCAAAGGTTTCAATCAAGAGATTGGAAGAGGTGCTGGAGGTATTGTGTATAAGGGTGTGTTGCCTGATAACCAAGTTGTAGCAATAAAGAGGTTGCATGAAGTAGCGAATCAAGGAGAAAGTGAGTTCCTGGCTAAGGTAAGCATCATTGGGAGGCTTAATCACATGAACTTAATTGGCATGTTGGGGTACTGTGCAGAGGGCAAGCATAGGTTGTTGGTTTATGAGTACATGGAAAATGGTTCTTTAGCTCAGAATCTCTCATCTAATTCAAATGTACTTGACTGGAGTAAGAGGTATAACATTGCTCTAGGAACAGCAAGGGGTCTGGCCTACTTACATGAAGAATGCTTGGAGTGGATTTTGCATTGTGATATTAAGCCCCAAAATATACTCCTTGACTCTGATTATAAACCAAAGGTAGCGGATTTTGGCTTGTCTAAGTTACTTAACCGGAACAACCTCAACAATTCAAACTTCTCAAGGATAAGAGGAACAAGAGGTTACATGGTACCGGAATGGGTTTTCAACCTGCCAATCACTTCCAAAGTCGATGTTTACAGCTACGGAATTGTTGTCTTGGATATGATAACTGGAAAGAGCCCAACAACAGAGGAAGAAACAAACGCAAGACCCAGCATGAGTCAAGTTGCTGAGAAGCTGCAAAGCCATATGCACACGATTCTTGATGGTTTGAGGAAAGAATAG 999 0.4254 MIMASSTLFLAFLVPLIFHTFQHSSSFSLSVDNLKEDVIVSSPKGTFTAGFYPVGGNAYSFAIWNNRKLPSGADKQGYVLAAAAGFRKFSYSELKHATKGFNQEIGRGAGGIVYKGVLPDNQVVAIKRLHEVANQGESEFLAKVSIIGRLNHMNLIGMLGYCAEGKHRLLVYEYMENGSLAQNLSSNSNVLDWSKRYNIALGTARGLAYLHEECLEWILHCDIKPQNILLDSDYKPKVADFGLSKLLNRNNLNNSNFSRIRGTRGYMVPEWVFNLPITSKVDVYSYGIVVLDMITGKSPTTEEETNARPSMSQVAEKLQSHMHTILDGLRKE 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0902 332 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 9 68 - -
Ssu2g0902 332 ProSitePatterns Protein kinases ATP-binding region signature. 105 127 IPR017441 GO:0005524
Ssu2g0902 332 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Ssu2g0902 332 ProSiteProfiles Protein kinase domain profile. 99 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0902 332 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 9 68 - -
Ssu2g0902 332 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 68 303 - -
Ssu2g0902 332 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 68 303 - -
Ssu2g0902 332 Gene3D Transferase(Phosphotransferase) domain 1 175 328 - -
Ssu2g0902 332 SUPERFAMILY Protein kinase-like (PK-like) 83 315 IPR011009 -
Ssu2g0902 332 Gene3D Phosphorylase Kinase; domain 1 66 174 - -
Ssu2g0902 332 SMART serkin_6 99 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0902 332 Pfam Protein kinase domain 102 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0902 Ssu-Chr2 45812245 45814737 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0902 89 321 Trihelix Transcription Factor Family AT1G68690 44.681 3.20e-63 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu2g0902 Pkinase 2.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0902 - - gmx:100808940 429.869