Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0901 ATGGCCTCCTCTACATTCTTATCGGCTTTTCTTGTTTCActaattttccataattttcaGCACGTTCTCCCTCTTCGTGGAGAAACTCAAAGAAGACGTAATAGTATCATCACCCAAGGGCACATTCACCGCGGGGTTTTATCTCGTAGGGGAAAATGTATATTGCTTCGCCATATGGTTCACCCAACCACCTCACACCGTTGTTTGGATGGCCAACTGAGACCAGTCAGTGAATGGAAACCGCTCCATGCTTTCCCTTCTCAAAATCGGAATAATGGGACATTACACAAACAATGTTATGTTCTTGCAACTGCAACGGGGTTTAGGAAATTCTGTTACTTTGAACTGAGGCAAGCCaccaaaggtttcagtgaagaGATTGGAATGAGAGCTAGAGGTACTGTGTATAAGGGTGTCTTGTCTGATAATCGAGTTGTGGCAATAAAGTATAGCATTGCTCTTGGAACGGCAAGGGGTCTGGCCTACTTACATGAAGAATGCTTGGAATGGATTTTGCATTGTGATATTAAGCCCCAAAATATACTTCTTGACTCTGATTATCAACTTAAGGTAGCAGATTTTGGCTTGTCTAAGCTACTAAACAGGAGCAACCTCAATAATTCAAGCTTTTCAAGAATAAGAGGAACAAGAGGTTACATGGCACCGGAATGGGTTTTCAACTTGCCAATCACTTCCAAGGTCGATGTTTACAGCTATGGAATTGTTGTCTTGGAGATGATAACCGAAAGGAGCCCAACAACAGGTATCCAAATCACAGAATTAGAAGCAGAGTCACCTCATCGCGAGAGATTGGTGACATGGGGGAGGGAGAAAGGGAGGAAAGGATCAGAAGTGGGATCATCTTGGGTGGATCAAATCGTTGACCCTATTTTGGGCTCAAACTATGACATGAAAGAAATGGAGATATTAGCAACGGTGGCTTTGGAATGTGTAGAGGAAGAGAAAGACGCAAGACCCAGCATGAGTCAAGTTGCGGAGAGGCtccaaaatcatgaaaatgatTCTTGA 1029 0.414 MASSTFLSAFLVSLIFHNFQHVLPLRGETQRRRNSIITQGHIHRGVLSRRGKCILLRHMVHPTTSHRCLDGQLRPVSEWKPLHAFPSQNRNNGTLHKQCYVLATATGFRKFCYFELRQATKGFSEEIGMRARGTVYKGVLSDNRVVAIKYSIALGTARGLAYLHEECLEWILHCDIKPQNILLDSDYQLKVADFGLSKLLNRSNLNNSSFSRIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMITERSPTTGIQITELEAESPHRERLVTWGREKGRKGSEVGSSWVDQIVDPILGSNYDMKEMEILATVALECVEEEKDARPSMSQVAERLQNHENDS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0901 342 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 149 342 - -
Ssu2g0901 342 Gene3D Transferase(Phosphotransferase) domain 1 140 342 - -
Ssu2g0901 342 SUPERFAMILY Protein kinase-like (PK-like) 102 335 IPR011009 -
Ssu2g0901 342 SMART serkin_6 28 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0901 342 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 88 149 - -
Ssu2g0901 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Ssu2g0901 342 ProSiteProfiles Protein kinase domain profile. 1 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0901 342 MobiDBLite consensus disorder prediction 323 342 - -
Ssu2g0901 342 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 149 342 - -
Ssu2g0901 342 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 88 149 - -
Ssu2g0901 342 Pfam Protein kinase domain 152 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0901 Ssu-Chr2 45802672 45807348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0901 152 339 Trihelix Transcription Factor Family AT5G38560 43.085 9.42e-39 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu2g0901 Pkinase 1.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0901 - - gmx:100808408 332.028