LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g0900	ATGCTAATGACTTCTTCAACATTTTTTCTGGCTCTTCTCCTTTTGCTAATTGTCCATAATTTTCAGCACTCatattcattctctctctctgtggAGAAACTCAAAGAAGACGTAATAGTGTCATACCCCAATGGCACTTTCACCGCAGGGTTTTACCCTGTAGGGGAAAACGCTTACAGCTTCGCCATATGGTACTCCCAACCACCTCACACAGTTGTTTGGATGGTTAACCGGGACCAGCCGGTAAACGGAAAACGCTCCACGCTCTCCCTTCTCGAAACCGGTGAACTCGTCTTAACTGACGCGGGCCAGTTTAAAGTGTGGTCCACAAACACCGCCACTTCATCGAAACAAGTTGAGTTACATTTGAATAGTGGGTCATTACACTCGGGTGCTGATAAACAAGGGTATGTTCTTGCAGCTGCAACGGGGTTTAGGAAATTCAGTTACTCTGAACTGAAACTTGCCACCAAAGGTTTTAGTGAAGAGATTGGAAGGGGTGCGGGAGGTACTGTGTATAAGGGTGCCTTGTCTGATAATCGAGTTGTGGCAATAAAGCGACTGCATGAAGTAACGAACCAAGGAGAAAGTGAGTTCCTGGCTGAAGTAAGCATCATTGGAAGGCTTAACCACATGAACTTAATTGGCATGTTGGGGTATTGTGCAAAGGGAAAGTATAGGTTGTTGGTTTACGAGTACATGAAGAATGGTTCTTTAGCTCAGAATCTCTCTTCCAATCCAAACGTACTTGACTGGAGTAAGAGGTATAACATTGCTCTGGGAACGGCAAGAGGTCTTGCCTACTTGCATGAAGAATGCTTGGAGTGGATTTTGCATTGTGATATTAAGCCCCAAAATATACTTCTTGATTCTGATTATCAACCCAAGGTAACAGATTTTGGCTTGTCTAAGCTGCTAAACCGGAACAACCTCAACAACTCAAGCTTCTCGAGGATAAGAGGAACAAGAGGTTACATGGCACCGGAATGGGTTTTCAACTTGCCAATCACTTCCAAGGTTGATGTTTACAGCTATGGAATTGTTGTCTTAGAGATGATAACCGGAAGGAGCCCAACCACAGGTATCCAAATCACAGAATTAGAAGCAGAGTCACCTCATCACGAGAGGTTGGTGACATGGGTGAGGGAAAGGAGGAAAGGATCAGAAGTGGGATCATCTTGGGTGGATCAAATCGTTGACCCTTGTTTGGGATCAGACTATGACAtgaataaaatggaaattttggCAACAGTGGCTTTGGACTGCGTAGAGGAAGAGAAAGACGCGAGACCCAGCATGAGTCAAGTTGCTGAGAGGCTCCAAAGTCATGAAAACGATTCTTGA	1344	0.4345	MLMTSSTFFLALLLLLIVHNFQHSYSFSLSVEKLKEDVIVSYPNGTFTAGFYPVGENAYSFAIWYSQPPHTVVWMVNRDQPVNGKRSTLSLLETGELVLTDAGQFKVWSTNTATSSKQVELHLNSGSLHSGADKQGYVLAAATGFRKFSYSELKLATKGFSEEIGRGAGGTVYKGALSDNRVVAIKRLHEVTNQGESEFLAEVSIIGRLNHMNLIGMLGYCAKGKYRLLVYEYMKNGSLAQNLSSNPNVLDWSKRYNIALGTARGLAYLHEECLEWILHCDIKPQNILLDSDYQPKVTDFGLSKLLNRNNLNNSSFSRIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMITGRSPTTGIQITELEAESPHHERLVTWVRERRKGSEVGSSWVDQIVDPCLGSDYDMNKMEILATVALDCVEEEKDARPSMSQVAERLQSHENDS	447

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g0900	447	Pfam	D-mannose binding lectin	71	128	IPR001480	-
	Ssu2g0900	447	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	277	289	IPR008271	GO:0004672\|GO:0006468
	Ssu2g0900	447	ProSitePatterns	Protein kinases ATP-binding region signature.	164	186	IPR017441	GO:0005524
	Ssu2g0900	447	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	10	124	-	-
	Ssu2g0900	447	SMART	serkin_6	158	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g0900	447	Gene3D	Phosphorylase Kinase; domain 1	136	233	-	-
	Ssu2g0900	447	SUPERFAMILY	Protein kinase-like (PK-like)	141	440	IPR011009	-
	Ssu2g0900	447	SUPERFAMILY	alpha-D-mannose-specific plant lectins	62	128	IPR036426	-
	Ssu2g0900	447	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	127	447	-	-
	Ssu2g0900	447	PANTHER	SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN	10	124	-	-
	Ssu2g0900	447	PANTHER	SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN	127	447	-	-
	Ssu2g0900	447	SMART	blect_4	31	146	IPR001480	-
	Ssu2g0900	447	Gene3D	-	30	135	IPR036426	-
	Ssu2g0900	447	ProSiteProfiles	Bulb-type lectin domain profile.	25	152	IPR001480	-
	Ssu2g0900	447	Gene3D	Transferase(Phosphotransferase) domain 1	234	447	-	-
	Ssu2g0900	447	CDD	STKc_IRAK	164	441	-	-
	Ssu2g0900	447	ProSiteProfiles	Protein kinase domain profile.	158	446	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g0900	447	Pfam	Protein kinase domain	161	436	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g0900	Ssu-Chr2	45797459	45799899	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g0900	148	444	Trihelix Transcription Factor Family	AT5G38560	44.000	2.91e-72	239

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Ssu2g0900		Pkinase	8.8e-54	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g0900	-		-	gmx:100808408	564.688