LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g0899	ATGATAATGGCCTCGTCCACATTCTTTTTGGCTTTTCTTGTTCCCctaatttttcatacttttcaGCACTCATTTTCATTCTCCCTCTCCGTTGACAACCTCAAAGAAGACGTAATAGTATCATCTCCCAAAGGCACATTCACCGCAGGGTTTTACCCCGTAGGCGGAAACGCTTACAGCTTCGCCATATGGTACACCCAACTACCTCACCCCATTGTTTGGATGGCCAACCGGGACCAGTCGGTAAACGGAAAACACTCGACGTTTTCCCTTCTCAAAACCGGTAACCTTGTCCTAACCGACGCGGGCCAGTCAATCGTGTGGTCCACAAACACCCTCACCTCATCGAGACAACGCCGGCTGCGTTTGAAGTTACCCTCGGGTGCTGACAAACAAGGCTACGTTCTTGCAGCGGCAGCGGGGTTTCAGAAATTCAATTACTCTGAACTGAAACATGCCACCAAAGGTTTCAGTCAAGAGATTGGAAGAGGTGCTGGAGGTATTGTGTATAAAGGTGCGTTGCCTGATAACCAAGTTGTAGCAATAAAGAGGTTGCATGAAGTAGCGAATCAAGGAGAAAGTGAGTTCCTGGCTGAGACTAAGAGGTATAACATTGCTCTGGGAACAGCAAGGGGTCTGGCCTACTTACATGAAGAATGCTTGGAGTGGATTTTGCATTGTGATATTAAGCCCCAAAATATACTTCTTGACTATGATTACAAACCAAAGGTAGCAGATTTTGGCTTGTCTAAGTTACTTAACCGGAACAACCTCAACAATTCAAGCTTCTCAAGGATAAGAGGAACAAGAGGTTACATGGCACCGAAATGGGTTTTCAACCTGCCAATCACTTCCAAAGTTGATGTTTACAGCTACGGAATTGTTGTCTTGGAGATGATAACTGGAAGGAGCCCAACAACAGGTATCCAAATCACCGAATTAGAAGCAGAGTCACATCATGACGAAAGGTTGGTAAAATGGGTGAGGGAGAAAAGGATGAAAGGATCAGGAATGGGATCATCTTGGGTGGATCAAATCGTTGACCCTATGTTGGGATCAAACTATGACATGAACAAAATGGAGATATTGGCAACTGTGGCTTTGGAATGtgtagaggaagaaaaaaacgCGAGACCCAGCATAAGTCAAGTTGCCGAGAAGCTGCAAAGTCATATGCACACGATTCTTGATGGTTCGAGGAAAGAATAG	1209	0.4409	MIMASSTFFLAFLVPLIFHTFQHSFSFSLSVDNLKEDVIVSSPKGTFTAGFYPVGGNAYSFAIWYTQLPHPIVWMANRDQSVNGKHSTFSLLKTGNLVLTDAGQSIVWSTNTLTSSRQRRLRLKLPSGADKQGYVLAAAAGFQKFNYSELKHATKGFSQEIGRGAGGIVYKGALPDNQVVAIKRLHEVANQGESEFLAETKRYNIALGTARGLAYLHEECLEWILHCDIKPQNILLDYDYKPKVADFGLSKLLNRNNLNNSSFSRIRGTRGYMAPKWVFNLPITSKVDVYSYGIVVLEMITGRSPTTGIQITELEAESHHDERLVKWVREKRMKGSGMGSSWVDQIVDPMLGSNYDMNKMEILATVALECVEEEKNARPSISQVAEKLQSHMHTILDGSRKE	402

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g0899	402	Pfam	D-mannose binding lectin	72	123	IPR001480	-
	Ssu2g0899	402	SMART	serkin_6	155	368	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g0899	402	Pfam	Protein kinase domain	195	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g0899	402	SUPERFAMILY	Protein kinase-like (PK-like)	145	388	IPR011009	-
	Ssu2g0899	402	Gene3D	-	30	129	IPR036426	-
	Ssu2g0899	402	ProSiteProfiles	Protein kinase domain profile.	86	396	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g0899	402	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	201	393	-	-
	Ssu2g0899	402	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	9	123	-	-
	Ssu2g0899	402	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	125	200	-	-
	Ssu2g0899	402	SMART	blect_4	30	145	IPR001480	-
	Ssu2g0899	402	Gene3D	Transferase(Phosphotransferase) domain 1	183	399	-	-
	Ssu2g0899	402	ProSiteProfiles	Bulb-type lectin domain profile.	25	149	IPR001480	-
	Ssu2g0899	402	PANTHER	SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN	201	393	-	-
	Ssu2g0899	402	PANTHER	SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN	9	123	-	-
	Ssu2g0899	402	SUPERFAMILY	alpha-D-mannose-specific plant lectins	60	122	IPR036426	-
	Ssu2g0899	402	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	224	236	IPR008271	GO:0004672\|GO:0006468
	Ssu2g0899	402	ProSitePatterns	Protein kinases ATP-binding region signature.	161	183	IPR017441	GO:0005524
	Ssu2g0899	402	PANTHER	SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN	125	200	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g0899	Ssu-Chr2	45779743	45782235	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g0899	145	390	Trihelix Transcription Factor Family	AT5G38560	35.452	4.63e-49	174

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Ssu2g0899		Pkinase	8.1e-32	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g0899	-		-	pvu:PHAVU_010G057000g	452.21