Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0898 ATGGCAGGGTTTTACCCCGTAGGAGAAAACGCTTACTGTTTCACCATATGGTTTACCCAACCACCTCACACCATTGTTTGGATGGCCAACCGAGACCAACAGGTAAACAAAAAACGCTCAATGCTTTCTCTTCTCAAAACCGGTAACCTCGTCTTAACCGATGTGGGCCAGTCCATCGTGTGGTCCACAAACACCATCACCTCATCCAAACAACTCCACCTCCATTTGTACAACACCGGCAACCTCGTTCTCCACGAGAATAAGGGGACATTATTGCACACTGGTACTGACAACAAACAAGGCTATGTTCCTGCGGGAGCAGCAGGGTTTAGGAAATTCAGTTACACTGAACTGAAACATGCCACCAAAGGTTTCAGTCAAGAGATTGGAAGGGGTGCTGGAGGTACTGTGTATAAGGGTGTCTTGTCTGATAATCGAGTTGTGGCAATAAAGCGACTGCATGAAGTAGTGAACCAAGGAGAAAATGAGTTCCTGGCTGAAGTGAGAACCATTGAAAGGCTTAACCACATGAACTTAATTGGCATGTTGGGGTATTGTGCAAAGGGCAAGCATAGGTTGTTGGTTTATGAGTACATGGAAAATGGTTCATTAGCTCAAAACCTTTCATCAAGTTCAAATGTACTTGATTGGAGTAAGAGGTATAGCATTGCTCTCGGAATGGCAAAGGGTCTGGCCTACTTGCATGAAGAATGCTTGGAGTGGATTTTGCATTGTGATATTAAGCCCCAAGATATACTTCTTGACTCTGATTATAAACCAAAGGTAGCGGATTTTGGCTTGTCTAAGCTACTAAATTGGAACAACCTCAACAACTCAAGCTTCTTCAGGATAAGAAGAACAAAAGGTTACATGGCACCGAAATTGGTTTTCAACTTGCCAATCACTTCCAAAGTGGATGTTTACAGCTATGGAATTGTTTTCTTGGAGATGATAACTAGAAAATTCCCAACAGCAGGTATCCAAATTATAGAATTAGAAGCAGAGTTGCATCATCACGAGAGGTTGGTAACATGGGTGAGggagaaaataacaaaaggatCAAAAGTGGGATCATCTTGGGTGGATCAAATCGTTGACCCTGTGTTGGGATCAAACTATGACATGAATGAAATGGAGATATTTTCAACGGTGGCTTTGGAAAGTGTAGAGGAAGAGAAAAACGCAAGATCCATCATCAGTCAAGTTGCCGAGAAGCTGCAAAGTCATATGCACACGATTCTTGATGTTTTGAACAAAGAATAG 1263 0.4204 MAGFYPVGENAYCFTIWFTQPPHTIVWMANRDQQVNKKRSMLSLLKTGNLVLTDVGQSIVWSTNTITSSKQLHLHLYNTGNLVLHENKGTLLHTGTDNKQGYVPAGAAGFRKFSYTELKHATKGFSQEIGRGAGGTVYKGVLSDNRVVAIKRLHEVVNQGENEFLAEVRTIERLNHMNLIGMLGYCAKGKHRLLVYEYMENGSLAQNLSSSSNVLDWSKRYSIALGMAKGLAYLHEECLEWILHCDIKPQDILLDSDYKPKVADFGLSKLLNWNNLNNSSFFRIRRTKGYMAPKLVFNLPITSKVDVYSYGIVFLEMITRKFPTAGIQIIELEAELHHHERLVTWVREKITKGSKVGSSWVDQIVDPVLGSNYDMNEMEIFSTVALESVEEEKNARSIISQVAEKLQSHMHTILDVLNKE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0898 420 SUPERFAMILY alpha-D-mannose-specific plant lectins 12 98 IPR036426 -
Ssu2g0898 420 ProSiteProfiles Protein kinase domain profile. 123 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0898 420 Pfam D-mannose binding lectin 24 94 IPR001480 -
Ssu2g0898 420 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 88 - -
Ssu2g0898 420 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 97 411 - -
Ssu2g0898 420 ProSitePatterns Protein kinases ATP-binding region signature. 129 151 IPR017441 GO:0005524
Ssu2g0898 420 Gene3D Phosphorylase Kinase; domain 1 95 198 - -
Ssu2g0898 420 ProSiteProfiles Bulb-type lectin domain profile. 1 97 IPR001480 -
Ssu2g0898 420 Gene3D Transferase(Phosphotransferase) domain 1 199 417 - -
Ssu2g0898 420 SUPERFAMILY Protein kinase-like (PK-like) 106 345 IPR011009 -
Ssu2g0898 420 Gene3D - 7 94 IPR036426 -
Ssu2g0898 420 SMART blect_4 2 99 IPR001480 -
Ssu2g0898 420 Pfam Protein kinase domain 126 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0898 420 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 2 88 - -
Ssu2g0898 420 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 97 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0898 Ssu-Chr2 45771695 45774017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0898 93 418 Trihelix Transcription Factor Family AT5G38560 38.973 2.90e-65 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu2g0898 Pkinase 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0898 - - pvu:PHAVU_010G057000g 512.686