Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0894 atggacaTGTACGGTTCCCTTTCCACCCCTTCGGATTGCTTACACATTGATGATTTTCTAGACTTCTCCAACATCATCACCACCGACacccgccaccaccaccatctttCTCCGCCGCAAAACCCTCCATTCTCCCAAGACCCcaatttcttcttcaatctCCCTTACGTTCCGAGCGACGAAGCAGCGGAGCTAGAATGGCTCTCCCAATTTGTGGACGATGACGCGACGTTGTTTCACGACTTCCCACCATCGGTGTCCATTGGATCTCACACGGCGTCGTTTCTcgccaataataataatcacagcaatgataatgataatgataatgatccTAAACCATCATCAGACATTCCATCTTCTTCCCCGGTCGCCGGAAAATCGAGAGCGAGGAGGGAGGGGTCGGTGGGCGAAGATGGAGCGGTGCGGCGGTGCAGCCACTGCGCCTCGGAGAAGACGCCGCAGTGGCGGACGGGACCACTGGGGCCAAAGACGCTGTGCAACGCGTGCGGAGTGCGGTTCAAGTCGGGTCGGCTCGTACCCGAATACCGACCCGCCGCGAGCCCCACCTTCGTCCTCACTCAGCACTCCAACTCTCACCGCAAGGTCATGGAGCTCCGTCGCCAAAAGGAGCTGCTCCGCCAACAAcaacagcagcagcagcaacagCAAGAGCAATGCTACCGTCACACTCACGACTTCAAAGTCTGCTGA 714 0.4902 MDMYGSLSTPSDCLHIDDFLDFSNIITTDTRHHHHLSPPQNPPFSQDPNFFFNLPYVPSDEAAELEWLSQFVDDDATLFHDFPPSVSIGSHTASFLANNNNHSNDNDNDNDPKPSSDIPSSSPVAGKSRARREGSVGEDGAVRRCSHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTQHSNSHRKVMELRRQKELLRQQQQQQQQQQEQCYRHTHDFKVC 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0894 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 143 203 - -
Ssu2g0894 237 Coils Coil 203 226 - -
Ssu2g0894 237 CDD ZnF_GATA 144 191 IPR000679 GO:0006355|GO:0043565
Ssu2g0894 237 PANTHER GATA TRANSCRIPTION FACTOR 10 226 - -
Ssu2g0894 237 Pfam GATA zinc finger 145 178 IPR000679 GO:0006355|GO:0043565
Ssu2g0894 237 PANTHER GATA TRANSCRIPTION FACTOR 2 10 226 - -
Ssu2g0894 237 MobiDBLite consensus disorder prediction 97 141 - -
Ssu2g0894 237 Gene3D - 141 189 IPR013088 GO:0006355|GO:0008270
Ssu2g0894 237 ProSiteProfiles GATA-type zinc finger domain profile. 139 175 IPR000679 GO:0006355|GO:0043565
Ssu2g0894 237 SMART GATA_3 139 189 IPR000679 GO:0006355|GO:0043565
Ssu2g0894 237 ProSitePatterns GATA-type zinc finger domain. 145 170 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0894 Ssu-Chr2 45576538 45578156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0894 32 220 C2C2-Gata Transcription Factor Family AT2G45050 52.804 4.26e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu2g0894 GATA 8.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0894 - - gmx:100782863 325.094