Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0889 ATGGACTTCGGAGAGAGCAACATGTTCAGTCTTGGCAACCACACCAAAGAGGGAAATGGAAATAGTAGTAGTAACAGTAACAATTGCAATCTTGTTTGGTATTCATCATGGGAAGCTACTACAATTATTCCTACTTCTAATTCTACCCTCATCAATACGCTACACACCACCACGGCGGCGGAGAGCTACGCCGCCGCCGCCGGCCACCACCAGCCGCAGCTGTACGGAGGCGAGGGGCGTCACGTGCAGGCGGACCCTCATCTCACGTGCTTGCATCTTGGTAAGAGACATTACTTTGAGGGTACCACTAACGGTGATGCTAGTGCTGCTACCCCTTTGGGGAACCGACACGTGTGCGGGGGCGGCGGGGGTTTTGTTTTGGAGGGTAACGATAAGAGAGCCAGAGGCTATTGTGGAAGTGGTGGAGGATCCGGAGCTGCTGGCGGCGGGAAAACGGCGCCGTTTGCCACGGTTCCGAGATGTCAGGTGGAGGGGTGCCACGTGGCGCTGCTGAACGCCAAGGAGTACCACAGGAGGCACAGAGTTTGTGATATGCATTCCAAGGCGCCCAAAGTTGTGGTGTTAGGGGTCGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTTTCAGAGTTTGACGACTCAAAGAGGAGTTGTAGGAGAAGACTGGCGGGCCATAATGAGCGAAGGAGAAAGAGCTCTCACCATTCTCTTACTAGAAGTTCTAGGCAAGGGTGTGCTCTCTCTCTTCTGTCATCTGGGAGTGATTGTTGGCTATCTCATGCTGATCTCTCCACAAGATGCAGTGCAGCATTACGTGAATTGATAGCAGAAAACCGTGCTGCCCTCGTGACTAGACAACTTGTTTATGATCGAGACTGTCATGTTATGCCCCACCATGCAGTGGAAGACTTTGAGGAGATACAACCTGAGTCCAATTATTTTCCACACCAGATGTTTCCCCAGACACAATAA 981 0.5178 MDFGESNMFSLGNHTKEGNGNSSSNSNNCNLVWYSSWEATTIIPTSNSTLINTLHTTTAAESYAAAAGHHQPQLYGGEGRHVQADPHLTCLHLGKRHYFEGTTNGDASAATPLGNRHVCGGGGGFVLEGNDKRARGYCGSGGGSGAAGGGKTAPFATVPRCQVEGCHVALLNAKEYHRRHRVCDMHSKAPKVVVLGVEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHHSLTRSSRQGCALSLLSSGSDCWLSHADLSTRCSAALRELIAENRAALVTRQLVYDRDCHVMPHHAVEDFEEIQPESNYFPHQMFPQTQ 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0889 326 MobiDBLite consensus disorder prediction 1 24 - -
Ssu2g0889 326 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 319 IPR044817 GO:0003677
Ssu2g0889 326 SUPERFAMILY SBT domain 159 239 IPR036893 GO:0003677|GO:0005634
Ssu2g0889 326 MobiDBLite consensus disorder prediction 8 24 - -
Ssu2g0889 326 Pfam SBP domain 161 234 IPR004333 GO:0003677
Ssu2g0889 326 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 22 319 - -
Ssu2g0889 326 ProSiteProfiles Zinc finger SBP-type profile. 158 235 IPR004333 GO:0003677
Ssu2g0889 326 Gene3D - 153 222 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0889 Ssu-Chr2 45343049 45345737 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0889 158 256 SBP-box Gene Family AT2G42200 66.337 1.86e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu2g0889 SBP 2.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0889 - - gmx:100780159 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0889 2 45343049 45345737 Ssu3g1065 3 24950775 24951623 PCT