Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0888 ATGTTGGACTACGAATGGGGGAACCCGTCTTCGATAATGCTCACCGGAAATGAGGATAGCGCCGCCGCGGGCTCCGACCAAAGCCACCGTCAAATCTTCGACCACTACGCCTCTCACACGTTCATCCCCGACAACTTTTTACACGCGCCCGCGCAccccaccgccaccaccaccgccgCAACCACCGTGGATTTCCCCCACCACCACTTCAACCCGcaaccccaccaccaccacgtGAACCACCACCACGCCTTCTTCGACCCACGCGCCTTCCAGGGCGCGTCGTCCGCCTCCTCCTACCCCCCACCCCCTTCCATGCTCTCCCTTGACCCGTTGCCTCACGTCAACGCAGTTGGGCCTGGGCACGGGCCTGGACCTGGGCCGGGCCTCCTTCTAGTCCCCAAGTCTGAGGACGTGGGTCGACCCATGGACTTCATCGGCTCACGAATTGGACTCAACCTCGGAGGACGAACATACTTTTCGTCCTCCGAGGATGATTTCGTGAGCCGACTCTACCGCCGGTCTAGGCCGGCGGAACCGGGGTCGACCGCGTCCTCCAACTCGCCGCGGTGCCAGGCCGAGGGATGCAATGCTGATCTGTCGCAGGCCAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCCTCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAgGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAGATTGGCAGATCATAATCGCCGCAGAAGAAAAACCCAGCAACCAACTCAAGAAATTCAGAAATCTCAGCCCACTTTGGATAATGTTGCAAgATCTCCACCGGACTCCGGAGCTCAGTCTTCGTCATCGGTGACGGTGGCAGTGTCGCCACCGGATTATTTCCGGCAGAGGCCATATCAAAGCATAAACCCTTCAACGACTTCAAGCTCACTGTTTTTCTCAAGCGGGTAG 990 0.5556 MLDYEWGNPSSIMLTGNEDSAAAGSDQSHRQIFDHYASHTFIPDNFLHAPAHPTATTTAATTVDFPHHHFNPQPHHHHVNHHHAFFDPRAFQGASSASSYPPPPSMLSLDPLPHVNAVGPGHGPGPGPGLLLVPKSEDVGRPMDFIGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAEPGSTASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVLAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPTQEIQKSQPTLDNVARSPPDSGAQSSSSVTVAVSPPDYFRQRPYQSINPSTTSSSLFFSSG 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0888 329 Gene3D - 181 252 IPR036893 GO:0003677|GO:0005634
Ssu2g0888 329 MobiDBLite consensus disorder prediction 269 302 - -
Ssu2g0888 329 MobiDBLite consensus disorder prediction 257 329 - -
Ssu2g0888 329 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 101 313 IPR044817 GO:0003677
Ssu2g0888 329 SUPERFAMILY SBT domain 189 269 IPR036893 GO:0003677|GO:0005634
Ssu2g0888 329 MobiDBLite consensus disorder prediction 309 329 - -
Ssu2g0888 329 Pfam SBP domain 191 264 IPR004333 GO:0003677
Ssu2g0888 329 ProSiteProfiles Zinc finger SBP-type profile. 188 265 IPR004333 GO:0003677
Ssu2g0888 329 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 101 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0888 Ssu-Chr2 45272549 45274693 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0888 1 238 SBP-box Gene Family AT1G02065 44.444 6.42e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu2g0888 SBP 5.7e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0888 2 45272549 45274693 Ssu2g0888 2 45272549 45274693 ECH