Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0882 ATGGGGTGGTTAGAGTCCAATCTGCCAGGGATTGCTATGTTGTTGAATCAGTTCATTATAGCAGGTATTAGTCTCAGCACAAGACTTGCTTTCTTACAAGGAATGAGCCCCGCGGTATTTGTAGTGTACCGTCATGCTTTTGCAACTACTGTGATTGCCCCCATAGCTTATTTCTCAGGGAGAAATTCTGGCTcctattacttaaatttaaagagTTTTTCCTGGATATTCTTGATCTCGCTTATTGGTATTACAGtgaaccaaaatttattttttgagggCGTATATCTGGCCTCTTCTTCAACTGCAAGTGCAATGGCCAATCTTGTTCCGGCCTTCACATTTGTAATAGCGGCTTGTACAGGGATGGAGAAAATGAACATTCGAAGCTTGAGATCATGGGCAAAGATAGTAGGGACAGTGACGTGTGTAAGTGGAGCAATGTCCATAGCGTTGTTGAAGGGTCAAAAGCTTCTAAATGCAGAAATCATGCCATCAAAATCCATCTTGGGCGCTGGAGATGAGAATTGGTTGCTGGgctgtctctctctctttggGTCCTGTATTGCCTGGTCACTTTGGCTCATTCTGCAGGTTCCGGCTTCCAAAAGCCACCCTGATCACTTGTCCTTCTCAGCTTGGATGTGTTTTATGGCAACATTACAAACCGCGGTGGTGACACTGTTCTTGGAGCAAGACCCAAATGCATGGAAGATTCGCTCTGTACTTGAATTTGGTTGCTCTTTATATTCAGGTGTTATGGGATCTGCGGTGTTATTCTTTCTCCAAGCATGGTGCATTTCACGAAGAGGTCCTCTTTTCTCTGCAATGTTTAATCCTCTTTTCACAGTGATTGCAACCGTATTGGCTGCCATATTACTTCACGAGGAAATATATGTTGGAAGCTTGTTAGGCGCAATTGGAGTGATCATTGGCTTATATGTTGTGCTGTGGGGTAAAGCTGAAGAAGTTGTGGTgaaagaggaggaggaagatcCAAAATCAACGGTTAATTCCACAGAGGATGTGAACAGTTTGATAGACGAATCCTATGAAAAAGCATGTTGTAAAACTGATTTGGAAGAACCCCTTTTATCTTCCGATTCTCCTTCACATCATTAA 1122 0.4002 MGWLESNLPGIAMLLNQFIIAGISLSTRLAFLQGMSPAVFVVYRHAFATTVIAPIAYFSGRNSGSYYLNLKSFSWIFLISLIGITVNQNLFFEGVYLASSSTASAMANLVPAFTFVIAACTGMEKMNIRSLRSWAKIVGTVTCVSGAMSIALLKGQKLLNAEIMPSKSILGAGDENWLLGCLSLFGSCIAWSLWLILQVPASKSHPDHLSFSAWMCFMATLQTAVVTLFLEQDPNAWKIRSVLEFGCSLYSGVMGSAVLFFLQAWCISRRGPLFSAMFNPLFTVIATVLAAILLHEEIYVGSLLGAIGVIIGLYVVLWGKAEEVVVKEEEEDPKSTVNSTEDVNSLIDESYEKACCKTDLEEPLLSSDSPSHH 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0882 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 214 320 - -
Ssu2g0882 373 PANTHER WAT1-RELATED PROTEIN 12 343 - -
Ssu2g0882 373 Pfam EamA-like transporter family 11 147 IPR000620 GO:0016020|GO:0016021
Ssu2g0882 373 Pfam EamA-like transporter family 179 317 IPR000620 GO:0016020|GO:0016021
Ssu2g0882 373 PANTHER WAT1-RELATED PROTEIN 12 343 IPR030184 GO:0016021|GO:0022857
Ssu2g0882 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0882 Ssu-Chr2 45134936 45138152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0882 1 373 Nodulin-like Gene Family AT4G30420 51.715 2.05e-134 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0882 - - gmx:100812331 553.518