Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0880 ATGAGAAAACGTATCAATATGGAAAGTGATGCTGACTACAATTCCTTAGGCACATCCTCCTCTTCCACCACCACCCCTTCAATCTTCACTGACACCAACACTTCTAGCACATCCTCCTCCTCAACATCTCCTACCACAAATTCAGATTCATGCACCAAAGGACACCCCAAAACCCCTCAAAATGACTCAACCACCTCTCAAACCTCATTGGAAAATAGAAAGGACTCAAAGGGGTGCAAGAAGAGGCAGAGAGACAATAGCAATCACAATCACCCTACTTATAGGGGTGTGAGGATGAGGAATTGGGGCAAATGGGTGTCCGAAATCCGCGAACCGAGGAAGAAGTCAAGAATATGGCTAGGAACATACCCTACAGCAGAAATGGCAGCAAGAGCACATGATGTGGCTGCCTTAGCCATCAAGGGCCTCTCAGCATACCTCAATTTCCCTGAATTGGCTCAAGAACTGCCAAGGCCAGCTAGCACATCACCTAAGGACATTCAAGCTGCAGCTGCAAAGGCTGCAAACACTGCCTTTGAGGTGGTTAAGCAATGTCAAAGAactgaagaagaagaagaagcagaaCAAAGCCAAGCAGAACAGGCCTCatcttcaactctctcaatggACAATGCTCAAGAGTCTTCAACCTCTCCCTCTATCAATGATGATGATACTTTGTTTGACCTTCCAGATCTTTTCCCTGATGGAAACCATGGACTTTGCTCCTATTCTTCTTCTTGGCACTTGTGTGCAGTTGATAGTGGGTTTAGGCTTGAGGAGTCTTTTTTTTGGGAGAACtattag 807 0.4349 MRKRINMESDADYNSLGTSSSSTTTPSIFTDTNTSSTSSSSTSPTTNSDSCTKGHPKTPQNDSTTSQTSLENRKDSKGCKKRQRDNSNHNHPTYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGLSAYLNFPELAQELPRPASTSPKDIQAAAAKAANTAFEVVKQCQRTEEEEEAEQSQAEQASSSTLSMDNAQESSTSPSINDDDTLFDLPDLFPDGNHGLCSYSSSWHLCAVDSGFRLEESFFWENY 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0880 268 SMART rav1_2 93 156 IPR001471 GO:0003700|GO:0006355
Ssu2g0880 268 CDD AP2 94 152 IPR001471 GO:0003700|GO:0006355
Ssu2g0880 268 MobiDBLite consensus disorder prediction 198 224 - -
Ssu2g0880 268 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 268 - -
Ssu2g0880 268 Pfam AP2 domain 92 142 IPR001471 GO:0003700|GO:0006355
Ssu2g0880 268 MobiDBLite consensus disorder prediction 186 224 - -
Ssu2g0880 268 MobiDBLite consensus disorder prediction 73 91 - -
Ssu2g0880 268 MobiDBLite consensus disorder prediction 11 72 - -
Ssu2g0880 268 MobiDBLite consensus disorder prediction 1 95 - -
Ssu2g0880 268 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Ssu2g0880 268 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Ssu2g0880 268 Coils Coil 182 205 - -
Ssu2g0880 268 SUPERFAMILY DNA-binding domain 93 151 IPR016177 GO:0003677
Ssu2g0880 268 ProSiteProfiles AP2/ERF domain profile. 93 150 IPR001471 GO:0003700|GO:0006355
Ssu2g0880 268 Gene3D AP2/ERF domain 93 151 IPR036955 GO:0003700|GO:0006355
Ssu2g0880 268 PANTHER ETHYLENE RESPONSE FACTOR 6 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0880 Ssu-Chr2 45049400 45050206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0880 81 264 AP2-EREBP Transcription Factor Family AT2G44940 57.282 6.92e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu2g0880 AP2 6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0880 - - gmx:100776436 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0880 2 45049400 45050206 Ssu2g0880 2 45049400 45050206 ECH