Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0879 ATGTTTGGGCGTGGACCAAGGAGGAGTGATAACTCcaaatattatgatattcttGGGGTTTCAAAAAATGCCAGTGAAGATGAAATCAAAAAGGCCTATAAAAAGGCGGCTATGAAGAACCATCCAGATAAGGGTGGAGATCCTGAAAAGTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAGAACTGTATGACCAATATGGTGAAGACGCCCTTAAAGAAGGGATGGGAGGAGGAGGAGGCTCATTTCATAATCCGTTTGATATATTTGAATCATTTTTTGGAGGAGCTAGCTTTGGTGGCGGTGGTAGTTCTCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGACGTCTATAATGGCACAACGAAGAAACTATCTCTTTCCAGAAACGTATTATGCCCAAAATGTAAAGGGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGTCAAGGCACCGGTATGAAGATTACAAGAAGACAGATTGGACTAGGCATGATTCAACAAATGCAACATGTTTGCCCTGAATGCAGAGGATCTGGTGAGGTCATTAGTGAGAGAGATAGATGTCCTCAGTGCAAAGGAAACAAGGTTTCCCAGGAAAAGAAGGTGCTGGAGGTGCATGTTGAGAAGGGGATGCAGCAGGGTCAAAAGATCGTTTTTGAAGGACAAGCTGATGAAGCTCCTGACACAATCACAGGAGACATTGTTTTTGTATTACAAGTAAAGGAGCACCCAAGGTTCAGGAGGGAGCATGACGACCTCTTTATTGATCACAATCTCAGCTTAACTGAGGCACTCTGTGGCTTCCAGTTTACTGTCACACATCTTGATGGTAGGCAACTATTGATCAAATCAAACCCTGGGGAAGTTATCAAGCCAgGTCAATATAAAGCAATAAATGATGAGGGAATGCCACAACACAATAGGCCATTCATGAAGGGACGCCTTTACATCCAGTTTAATGTTGATTTCCCAGAGTCAGGGTTTCTTTCCCCTGAACAATGCCAGTTATTGGAAAAGGTATTACCTCAGAAGTCCAGCAAGCACGTGTCAGATATGGAGCTGGATGATTGTGAGGAGACCACTTTGCATGATGTCGCCAACATTAAGGAGGAGATGAAACGGAAGCAGCAACAGCAATACCGTGAGgcatatgatgatgatgatgatgagccATCTGGTCATCGAGTGCAATGTGCTCAACAGTAG 1266 0.4218 MFGRGPRRSDNSKYYDILGVSKNASEDEIKKAYKKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKKELYDQYGEDALKEGMGGGGGSFHNPFDIFESFFGGASFGGGGSSRGRRQKHGEDVVHSLKVSLEDVYNGTTKKLSLSRNVLCPKCKGKGSKSGTAGRCFGCQGTGMKITRRQIGLGMIQQMQHVCPECRGSGEVISERDRCPQCKGNKVSQEKKVLEVHVEKGMQQGQKIVFEGQADEAPDTITGDIVFVLQVKEHPRFRREHDDLFIDHNLSLTEALCGFQFTVTHLDGRQLLIKSNPGEVIKPGQYKAINDEGMPQHNRPFMKGRLYIQFNVDFPESGFLSPEQCQLLEKVLPQKSSKHVSDMELDDCEETTLHDVANIKEEMKRKQQQQYREAYDDDDDEPSGHRVQCAQQ 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0879 421 CDD DnaJ_C 120 346 - -
Ssu2g0879 421 CDD DnaJ_zf 149 215 IPR001305 GO:0031072|GO:0051082
Ssu2g0879 421 Gene3D DnaJ domain 10 110 IPR036869 -
Ssu2g0879 421 PANTHER CHAPERONE PROTEIN DNAJ A6 7 421 - -
Ssu2g0879 421 CDD DnaJ 14 63 IPR001623 -
Ssu2g0879 421 Pfam DnaJ domain 13 71 IPR001623 -
Ssu2g0879 421 SMART dnaj_3 12 66 IPR001623 -
Ssu2g0879 421 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Ssu2g0879 421 Gene3D - 111 263 - -
Ssu2g0879 421 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Ssu2g0879 421 Pfam DnaJ central domain 149 215 IPR001305 GO:0031072|GO:0051082
Ssu2g0879 421 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 7 421 IPR044713 GO:0006457|GO:0030544
Ssu2g0879 421 SUPERFAMILY HSP40/DnaJ peptide-binding domain 120 264 IPR008971 GO:0006457|GO:0051082
Ssu2g0879 421 ProSiteProfiles Zinc finger CR-type profile. 136 220 IPR001305 GO:0031072|GO:0051082
Ssu2g0879 421 MobiDBLite consensus disorder prediction 388 414 - -
Ssu2g0879 421 PRINTS DnaJ domain signature 15 33 IPR001623 -
Ssu2g0879 421 PRINTS DnaJ domain signature 46 66 IPR001623 -
Ssu2g0879 421 PRINTS DnaJ domain signature 66 85 IPR001623 -
Ssu2g0879 421 Gene3D - 149 215 - -
Ssu2g0879 421 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 146 217 IPR036410 -
Ssu2g0879 421 MobiDBLite consensus disorder prediction 388 421 - -
Ssu2g0879 421 Hamap Chaperone protein DnaJ [dnaJ]. 10 391 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Ssu2g0879 421 Gene3D - 264 345 - -
Ssu2g0879 421 Pfam DnaJ C terminal domain 123 344 IPR002939 -
Ssu2g0879 421 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 356 IPR008971 GO:0006457|GO:0051082
Ssu2g0879 421 SUPERFAMILY Chaperone J-domain 9 109 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0879 Ssu-Chr2 44969911 44972876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0879 8 73 C2H2 Transcription Factor Family AT1G74250 42.667 1.55e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0879 K09503 - gmx:100812236 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0879 2 44969911 44972876 Ssu2g0879 2 44969911 44972876 ECH