Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0877 ATGTGGGCACAAGTAGTGGGATGGCCACCTGTTCGATCTTATAGGAGGAATAGTCTAcaacaaaagaaaggagaacAAGGTGAAGGGGCTGGGATGTACGTGAAAGTTAGCATGGCAGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTTTATAAGAGCTACCCAGAACTCCTCAAGGCCTTGGAAAATATGTTCAAGGGCACATTTGAAAGgaggaataaaattttaataggaaTTACTTGTGATCCAGGTGAATATTCGGAAAGGGAAGGCTACAATGGATCTGAATATGCTCCAAGTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGACGTTCCATGGCACATGTTCGTGTCATCCTGCAAGAGGCCGAGAATAATGAAAGGATCAGAAGCAAAGGAGTTGGGTtgtttttga 426 0.4038 MWAQVVGWPPVRSYRRNSLQQKKGEQGEGAGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMFKGTFERRNKILIGITCDPGEYSEREGYNGSEYAPSYEDKDGDWMLVGDVPWHMFVSSCKRPRIMKGSEAKELGCF 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0877 141 Pfam AUX/IAA family 3 138 IPR033389 -
Ssu2g0877 141 Gene3D - 26 141 - -
Ssu2g0877 141 ProSiteProfiles PB1 domain profile. 31 137 IPR000270 GO:0005515
Ssu2g0877 141 PANTHER AUXIN-INDUCED PROTEIN 3 139 - -
Ssu2g0877 141 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 139 IPR003311 GO:0005634|GO:0006355
Ssu2g0877 141 SUPERFAMILY CAD & PB1 domains 27 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0877 Ssu-Chr2 44927105 44928937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0877 22 138 B3 DNA Binding Superfamily AT2G46530 31.624 1.86e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu2g0877 AUX_IAA 1.6e-55 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0877 K14484 - gmx:100780752 224.557