Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0871 ATGCACGGGAAAAAGGACCAAGAAGAGTATATAAGGAAAGGGCCATGGAAAGCAGAAGAAGATGAGGTGCTACTGAGCCACGTGAAGAAGTATGGTCCCAGAGATTGGAGCTCCATTCGATCCAAGGGTCTTCTTCAAAGGACTGGCAAGTCATGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAACCTCAAGAATGGTTGCAAGTTTTCACTAGAGGAAGAGAGGGTTGTCATAGAGTTGCAGGCACAATTTGGGAACAGGTGGGCTAAGATTGCATCCTATTTGCCAGGGAGAACAGACAATGATGTAAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCTAGGATTCTGCAGACATCAGCAACAAATCCCACAtcacagaaaaataaaactaaagttCCTACCGTTCTTGATGTTGCCACTTTGGAgGCTCCTAAGTTCAGTTCATCATCAGAGGGAGAACCATCGTCAAAGCCTCAGTCAAGCTCACTACCCTTCATTGAGAATTCTGAATTTATCAAAATGGTGTCTTTGCCAGATCTCATAAAGTCTGAGTTGCCTAGTTCTGACACAAGCCATCTTGAGCAAGAGTTTACCCTTTTTGAGAACTATAGAAGTACTGAACAGATTGACTTTCCTCAGATTCCAGAACTCCATAATGATCTCACATTACCAATGGAAAGCCAAGATCACTTGGCCAGAATTGATGAGCCGTGTTTCATTGAAGACTTTGGTCCTCTTGATGCATCTGAATTTGGAATAGGTCCACAACACCCCCTTGGGTTCCCTTTCTTTGAGCCACCAGGAAGTTGCAGAATTGGGCCAAGGGATGCAATTGATAACTGCAAAAACAGTGACAGCTTCTTCGATGATTTCCCTGTGGACATGTTTGACCACATGGAGTCACCTGCAAGCCCTTCAAACCTCTGA 936 0.4359 MHGKKDQEEYIRKGPWKAEEDEVLLSHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIELQAQFGNRWAKIASYLPGRTDNDVKNFWSSRQKRLARILQTSATNPTSQKNKTKVPTVLDVATLEAPKFSSSSEGEPSSKPQSSSLPFIENSEFIKMVSLPDLIKSELPSSDTSHLEQEFTLFENYRSTEQIDFPQIPELHNDLTLPMESQDHLARIDEPCFIEDFGPLDASEFGIGPQHPLGFPFFEPPGSCRIGPRDAIDNCKNSDSFFDDFPVDMFDHMESPASPSNL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0871 311 Gene3D - 13 65 - -
Ssu2g0871 311 PANTHER TRANSCRIPTION FACTOR DUO1 1 310 - -
Ssu2g0871 311 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Ssu2g0871 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 64 IPR017930 -
Ssu2g0871 311 CDD SANT 69 108 IPR001005 -
Ssu2g0871 311 CDD SANT 15 60 IPR001005 -
Ssu2g0871 311 PANTHER TRANSCRIPTION FACTOR DUO1 1 310 - -
Ssu2g0871 311 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu2g0871 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
Ssu2g0871 311 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Ssu2g0871 311 MobiDBLite consensus disorder prediction 147 166 - -
Ssu2g0871 311 Pfam Myb-like DNA-binding domain 16 75 - -
Ssu2g0871 311 Gene3D - 68 138 - -
Ssu2g0871 311 SMART sant 66 114 IPR001005 -
Ssu2g0871 311 SMART sant 12 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0871 Ssu-Chr2 44579381 44581405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0871 1 308 MYB Transcription Factor Family AT3G60460 47.962 3.86e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu2g0871 Myb_DNA-bind_6 5.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0871 K09422 - gmx:100805384 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0871 2 44579381 44581405 Ssu2g0871 2 44579381 44581405 ECH