Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0859 ATGTTCCTCTACCGCCAGGTTTGCACCACCTCAAAGCTCTCAAAGATCCCATGGAAGTACAAGAAGTTCGCCATAACACAAGGCCAGAAGGCCCTAACCGATTACCTCCACGCCACGCGCTGCATCCCTTATGCCTACGCTGACCAAATTGCCAAAAACTCCCTCACTGCCCTCACCAACCTCATCACCAAGCTCGGATCTTTTTCCCCTTCCAACTTTCCCCACAACCTCAACAAGTTCCTCAGGTACAACCCCATCAACGAATTTGAGTTTTTCTTCGAAAGCATTGGCATTGACCCCTCCAAGTTCCCCTCTTTGTTGCCCCCCAACAATTTCTTCTTCTCTGAAGATGGGACCCTTTTGGATGTTGCTTGTGTTCTCAATGAATTTGGGTTTCCCTGGGACAAGCTTGGGGTGTTGTATGTGGAGAGTGGTTGTGCCTTCAAGTGGGGTGCTTCTGAGTTGAAGGGTAGGTTGTGTGACTTCAAAAGTTATGGCTTTTGCAATGTGCAGGTTGTGGGGATATGTTTGGCTTTCCCCTTTGTGTTTAATGGCCAAAGGGGTGCTGAGGTTGATGCTTTGTTTTGTGATCTGAGGGTGCTGTTTGAGGAGTTTTGTTTGGCTGGGTGTGTTGAGGGGAAGGGGAATAGTGTGGATGATTGGTATGGGGTGTGTAGGAAGATAAGGGTGTTTTTTGATTTGAATGGTGGGAAGAACATAGGGGAGCGTATTGGAGGGAACAAAGGTGTAGGTGTCATTGTTGAGCATACGGAAGGGGAGTTGGTTCAAGCAGCTGAGTATTTTTGTAGGTTTGGTGTGAAGAAGGAGGACGTGGCGCGGTTGATTCTCGAGGGGGAGGAGTTGTTGGAGCTTGATTTGGAGATGCGGGTGGTCAATGTGTTGAAGCTGTTGAAACACTTTGGAATGAGCTCCAATGGTGTTGAGGATGTTAGGAGGGATTATGCTCATGTGTTGGGGACAGTTAAGATGGGTAATCTGCCCAATGTGATGAGGGCTTTGGGTTTACATGAGTGGTTCTTTGATAAGATCAAGGATGGGAATCATCGGTTATTAGTTAGTTTTGTTGCGAGCTATCCCAATGAGGTTCGAGATAAAGGTTATCTAGGTCGCGTGAAGGCAATTCGGGCGTCGAGAACCCCGACTCACAATATGAGCAAGTTGGATTTCTTGCACGCCATTGGCTTTGGAGAAAATGCTTTGACCATGAATGTGTATACTCAGATGCATGGAACAAGTGGCGAGTTGCAAAAGAGATTTGATTGCCTCCTACGTTTCGGGATCGAGTTCTCAAAGGTCTGTAAGATGATCACGGTTCATCCTAAGATTCTGAGCCAAAACCCTGAAAGTTTAGAGCAAAAGATTAATTTCTTCTGTCAGGAAATGGGACACTCAGTAGAGCATTTGGCCACTTTTCCAGCATTCTTGTGCTTTGACTTAGAGAACCGCATTAAGCCTAGGTACAGGTTCCATATGTGGGTTATGGAAGAGGGTCTGTCCTCCAAAAACTATTCCATTGCGAGCATGGTTGCAACAAGCAACAGGAATTTTGTTGCTCGCGCTTTTAAAATTCACCCAGCTGCTCCGAAACATTGGTTTGAGCAATTCTATCCAAGCAATTGGCCATTGTGA 1650 0.4642 MFLYRQVCTTSKLSKIPWKYKKFAITQGQKALTDYLHATRCIPYAYADQIAKNSLTALTNLITKLGSFSPSNFPHNLNKFLRYNPINEFEFFFESIGIDPSKFPSLLPPNNFFFSEDGTLLDVACVLNEFGFPWDKLGVLYVESGCAFKWGASELKGRLCDFKSYGFCNVQVVGICLAFPFVFNGQRGAEVDALFCDLRVLFEEFCLAGCVEGKGNSVDDWYGVCRKIRVFFDLNGGKNIGERIGGNKGVGVIVEHTEGELVQAAEYFCRFGVKKEDVARLILEGEELLELDLEMRVVNVLKLLKHFGMSSNGVEDVRRDYAHVLGTVKMGNLPNVMRALGLHEWFFDKIKDGNHRLLVSFVASYPNEVRDKGYLGRVKAIRASRTPTHNMSKLDFLHAIGFGENALTMNVYTQMHGTSGELQKRFDCLLRFGIEFSKVCKMITVHPKILSQNPESLEQKINFFCQEMGHSVEHLATFPAFLCFDLENRIKPRYRFHMWVMEEGLSSKNYSIASMVATSNRNFVARAFKIHPAAPKHWFEQFYPSNWPL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0859 549 Pfam mTERF 392 523 IPR003690 GO:0003690|GO:0006355
Ssu2g0859 549 Gene3D Transcription termination factor 3, mitochondrial 256 542 IPR038538 -
Ssu2g0859 549 PANTHER CGI-12 PROTEIN-RELATED 10 542 IPR003690 GO:0003690|GO:0006355
Ssu2g0859 549 SMART mt_12 472 506 IPR003690 GO:0003690|GO:0006355
Ssu2g0859 549 SMART mt_12 279 310 IPR003690 GO:0003690|GO:0006355
Ssu2g0859 549 SMART mt_12 440 471 IPR003690 GO:0003690|GO:0006355
Ssu2g0859 549 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF18, MITOCHONDRIAL 10 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0859 Ssu-Chr2 44033550 44035199 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu2g0859 mTERF 3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0859 - - gmx:100812245 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0859 2 44033550 44035199 Ssu2g0859 2 44033550 44035199 ECH