Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0857 ATGTCGAGGAAGAAGCTGAGGTTGTCGAAGGAACAGGCCATGGTGCTGGAAGAAACATTCAAGGAACACAACACTCTGAACCCGaaACAAAAGCAAGCTTTGGCAAAGCAGTTGAATCTGATGCCTAGACAGGTGGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAGACTGAAGTGGATTGTGAATACTTGAAGAGATGCTGTGAGAATCTAACTGAAGAGAATAGGAGGTTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCCCCACAGCTCTACATGCACATGAACCCTCCCACCACTCTCACAATGTGCCCTTCATGTGAGCGTGTCGCTGTCTCATCTGCATCCTCTTCCTCATCGGCCACCATGCCTTCTGCCCCACCTCCTGCCAATCACAACCCGTTAGGCCCTACCATCCAGCGGCCGGTGCCTGTGAACCCTTGGGCGGCAATGTCGTTTCAACACCGTGCACGGCCATAA 501 0.507 MSRKKLRLSKEQAMVLEETFKEHNTLNPKQKQALAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSASSSSSATMPSAPPPANHNPLGPTIQRPVPVNPWAAMSFQHRARP 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0857 166 Coils Coil 65 95 - -
Ssu2g0857 166 SMART halz 59 102 IPR003106 GO:0006355|GO:0043565
Ssu2g0857 166 SUPERFAMILY Homeodomain-like 3 68 IPR009057 -
Ssu2g0857 166 PANTHER - 2 160 - -
Ssu2g0857 166 CDD homeodomain 3 60 IPR001356 GO:0003677
Ssu2g0857 166 MobiDBLite consensus disorder prediction 122 150 - -
Ssu2g0857 166 Gene3D - 7 57 - -
Ssu2g0857 166 ProSiteProfiles 'Homeobox' domain profile. 1 59 IPR001356 GO:0003677
Ssu2g0857 166 ProSitePatterns 'Homeobox' domain signature. 34 57 IPR017970 GO:0000981|GO:0006355
Ssu2g0857 166 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 2 160 - -
Ssu2g0857 166 Pfam Homeodomain 3 57 IPR001356 GO:0003677
Ssu2g0857 166 SMART HOX_1 1 63 IPR001356 GO:0003677
Ssu2g0857 166 Pfam Homeobox associated leucine zipper 59 93 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0857 Ssu-Chr2 43929249 43931473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0857 2 163 Homeobox Transcription Factor Family AT3G60390 75.309 1.61e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu2g0857 Homeodomain 2.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0857 K09338 - gmx:100798480 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0857 2 43929249 43931473 Ssu2g0857 2 43929249 43931473 ECH
Ssu2g0857 2 43929249 43931473 Ssu3g0515 3 12811286 12813495 PCT