Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0847 ATGGCTGCTTCAATATTCTGCGATTTTTCTCCATTGGAATGTGTTCAACACCGTCTGCTTCAGCTTGAACGTGATTCCAACACTCTCACGAATGTTTCCAACCCCCAAATTAGTTACTCTCCATCGTACGAACCATTGCCAAGCCCTACGTTAGGCTCGGACAGTGTCCACGAGGCGAAGGGTTTGTGGGCGTGCAAAAGGGAACAGCCTGTGGAAGCACGTGAAGATCACGCGCCGCCGGTATGCAAGCGCTGCCGGGGCGTGAGGCGGAGGCCGTCGGGGAAGTTCGCGGCAGAGATAAGGGACCCAAAGAAGAAGGGTGCAAGGGTTTGGCTTGGGACTTATGAGACTGAAGAAGAAGCGGGTTTAGCTTATGATAGAGCTGCTTTCAAGATGCGTGGTAGCAAAGCTAAGTTGAATTTTCCTCTCCTTGTTGGTGCCCACGCGCCTCTGAAGCCGGTGAGAATCATGAAGGCTTCAAAGCAAAACTTGCTGAAGCCTTCTTCGTCACTCTTACCGGCTTCAGAGACACGAGTCAAAGGAGAGGAAGAACTTGGCTGA 561 0.5187 MAASIFCDFSPLECVQHRLLQLERDSNTLTNVSNPQISYSPSYEPLPSPTLGSDSVHEAKGLWACKREQPVEAREDHAPPVCKRCRGVRRRPSGKFAAEIRDPKKKGARVWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPLLVGAHAPLKPVRIMKASKQNLLKPSSSLLPASETRVKGEEELG 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0847 186 PANTHER DNA-BINDING DOMAIN 51 157 IPR044808 GO:0003700|GO:0009873
Ssu2g0847 186 SMART rav1_2 84 148 IPR001471 GO:0003700|GO:0006355
Ssu2g0847 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13-LIKE 51 157 - -
Ssu2g0847 186 Gene3D AP2/ERF domain 84 144 IPR036955 GO:0003700|GO:0006355
Ssu2g0847 186 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Ssu2g0847 186 PRINTS Ethylene responsive element binding protein signature 124 144 IPR001471 GO:0003700|GO:0006355
Ssu2g0847 186 CDD AP2 86 142 IPR001471 GO:0003700|GO:0006355
Ssu2g0847 186 MobiDBLite consensus disorder prediction 165 186 - -
Ssu2g0847 186 Pfam AP2 domain 85 134 IPR001471 GO:0003700|GO:0006355
Ssu2g0847 186 SUPERFAMILY DNA-binding domain 84 143 IPR016177 GO:0003677
Ssu2g0847 186 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0847 Ssu-Chr2 43672975 43673535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0847 86 156 AP2-EREBP Transcription Factor Family AT2G44840 77.465 1.01e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu2g0847 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0847 K09286 - gmx:100527194 224.557