Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0841 ATGGAGAGGATTGCAGAGCCAAAGGTACTTCCGCGGACCTTGCCTATCCTGGTTGAGGTATCGAATGCGCACACAGCTGCAGCAAGAGAGTCAGGTCAGAGACTAAATCGGCAGGAGGTTTCAAGTATTGGTGGGATTTCAGTGAGAGAAGTGAATCAATTGTCCAAAACAAGGGATGTGCAGGTGCCTATTACACGACTGGCCTCCATCAGGGAAGTGGCTCAGTTAACGAATGCACGGATATATTTGGTACGAGAAGACATGGGATTCGATACTCGATCCTCTGAAGAATCCCTCACCTTTGAGCCTACCATAGCATGGAAAGGAAACACCTCTTCACCAGAAGCCGAAGAATTAGAATTTGTGCCTGATGTTGAGACATTGAAGGGAAGCAGTGATTCATTTGAGGATGGTGGTCCAAGTTTATTTGCTGGTGCTAGTCATCCCCCAGAACCTGTTGATACAGATCTTATGAGAACAGTTTATGTACCAATAGGACAAAACAAATCTGAGGCTGGATGCTTAATTAAGAACTTGCCCTCAAAGGGCCCTTTTCTGGAAGATCTCTCAATTCGTGTTCCTGCAAAGAAACCAAGTCCAGCTGTTCTTTCCCCTGAAGAAAGTCTGGTTGAAGAACTAAATGACATAGGGAACATAGCATTTTTGGGTCCTCGGGCATCGCAGAATACTGAGAACTCTCTCCTCCCTCCAGATGCTGAGGAAAAAGAATGTGTTTGGGATGCTTCTTTGCCTCCTAGTGGTAATGTCAGTCCACTTAGTAGTATTGATAGTACTGGTGTTGTCACCGCAATGAGCATTGTTAATAGTTGTGCTAGTACATATCGGAGTGATGCAATCACTAGTGATGGCATGCTTAGTTTAGACAGGAACTGTGATAGTACTAAAGGGAGTGTAAAGGGGGATTCTCTAGAGAGTGCTAAAACTAGTGCTAGTCGGGCAAGTGATAGCAGTGGCCTCAGCGATGACAGCAACTGGAGCAACATTACTGGTAGTGCCAATAAGCCTCACAAAGGAAATGATCCTAGGTGGAAGGCTATCCTTGCCATCCGATTACGGGATGGAATTTTGGGCATGAGTCATTTTAGATTACTCAAACGACTAGGATGTGGTGATATTGGAAGTGTATATCTCTCAGAGCTGAGTGGAACTAGGTGTTATTTTGCAATGAAAGTTATGGATAAGGCATCCCTAGCAAGCAGAAAGAAGCTGACTAGAGCACAGACAGAGAGGGAGATATTGCAGTTGCTGGACCATCCATTTCTACCAACTTTGTATTCACATTTTGAGACTGACAGATTCTCGTGTTTGGTAATGGAATATTGTCCGGGGGGTGATCTGCACACTTTAAGGCAGCGGCAACCTGGGAAACATTTCTCAGAATATGCTGCACGCTTTTATGCTGCGGAGGTCCTGCTTGCTCTTGAATATCTTCACATGCTTGGAGTTGTGTATAGAGACCTTAAACCCGAAAATGTGTTGGTCCGAGATGATGGTCACATAATGCTATCAGATTTTGATCTTTCCCTCAGATGTGCTGTTTCGCCTACTCTTATTAGAACTTCCTATGATGGTGACCCTTCAAAACGGGCTGGTGGTGCATTCTGTGTTCAACCTGCATGTATTGAGCCATCATCAGTGTGTATCCAACCTGCATGTTTTATTCCTCGGTTATTTCCCCAGAAAAACAAGAAGTCACGGAAGCCAAGAGCTGATCCTGGGTTGCCGTCCAGCACCCTTCCAGAGCTCGTTGCTGAGCCTACTCAAGCTCGATCTATGTCCTTCGTTGGCACTCACGAGTACCTTGCCCCGGAAATTATCAAAGGAGAAGGTCATGGAAGTGCAGTTGATTGGTGGACATTTGGAATTTTCTTGCATGAGCTATTATATGGTAAAACCCCTTTCAAAGGGTCAGGAAACCGAGCTACACTTTTCAATGTAGTAGGTCAGCAGCTCAGGTTCCCCGAATCCCCTGCAACCAGTTATGCCAGCAGGGATCTGATCCGTGGCTTACTAGTTAAGGAGCCACAGCATCGTCTTGGGGTTAAAAGGGGTGCAACTGAGATCAAGCAGCACCCCTTCTTTGAAGGTGTGAACTGGGCATTGATTAGGTGCAGCACACCGCCAGAAGTGCCGAGACCAGTGGAAAATGAACTACCAGGGAAGGTTGGACCAGTTGATCCTGTTGGGGTTGGCAGCACTAGTAAGAGGATAGTAGGTACTGACATGAAGTCTGGGGGTAAATATCTGGACTTTGAGTTCTTTTAG 2286 0.4589 MERIAEPKVLPRTLPILVEVSNAHTAAARESGQRLNRQEVSSIGGISVREVNQLSKTRDVQVPITRLASIREVAQLTNARIYLVREDMGFDTRSSEESLTFEPTIAWKGNTSSPEAEELEFVPDVETLKGSSDSFEDGGPSLFAGASHPPEPVDTDLMRTVYVPIGQNKSEAGCLIKNLPSKGPFLEDLSIRVPAKKPSPAVLSPEESLVEELNDIGNIAFLGPRASQNTENSLLPPDAEEKECVWDASLPPSGNVSPLSSIDSTGVVTAMSIVNSCASTYRSDAITSDGMLSLDRNCDSTKGSVKGDSLESAKTSASRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRLRDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYSHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRTSYDGDPSKRAGGAFCVQPACIEPSSVCIQPACFIPRLFPQKNKKSRKPRADPGLPSSTLPELVAEPTQARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVENELPGKVGPVDPVGVGSTSKRIVGTDMKSGGKYLDFEFF 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0841 761 SMART serkin_6 368 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0841 761 MobiDBLite consensus disorder prediction 300 345 - -
Ssu2g0841 761 PANTHER FLIPPASE KINASE 1-RELATED 76 761 - -
Ssu2g0841 761 Pfam Protein kinase domain 598 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0841 761 Pfam Protein kinase domain 369 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0841 761 Gene3D Transferase(Phosphotransferase) domain 1 596 718 - -
Ssu2g0841 761 CDD STKc_phototropin_like 366 720 - -
Ssu2g0841 761 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 76 761 - -
Ssu2g0841 761 MobiDBLite consensus disorder prediction 300 341 - -
Ssu2g0841 761 ProSiteProfiles Protein kinase domain profile. 368 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0841 761 Gene3D Transferase(Phosphotransferase) domain 1 452 520 - -
Ssu2g0841 761 SUPERFAMILY Protein kinase-like (PK-like) 349 722 IPR011009 -
Ssu2g0841 761 Gene3D Phosphorylase Kinase; domain 1 366 451 - -
Ssu2g0841 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0841 Ssu-Chr2 43520120 43523989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0841 1 761 AGC Kinase Gene Family AT2G44830 66.412 0.0 957
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu2g0841 Pkinase 7.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0841 - - gmx:100792314 1407.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0841 2 43520120 43523989 Ssu2g0841 2 43520120 43523989 ECH
Ssu2g0841 2 43520120 43523989 Ssu3g0531 3 13109227 13112759 PCT