Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0824 ATGAGCCCTCATGCTTTAAACACCAATGTGAATGCCCTTGATCACCTTGAGCTCCCTGTAACGACACTGTTTCAGGATGCTTCGGCATCAACGCCGTCCATGGTGGCGTTCTGCCAGAGCTCCAGCTTCCGGGACATTTTCTTGGCGGAGAACTGGGCGGAGCTGCCGTTGAAGGAGGACGACGCCGACGACATGGTAATCTACGGCGCTTTACGAGAGGCCGCCACCACCGGATGGTTCCCCGCCAATGGCAATGAGGTGGGTAACTTTGATGTAGTCGTGAAAGTGGAAAATGAGAACCAAAATAGTGATACTACAGCCGCGCGTGGCACTCACGCGCCTCCAAGGAAGGGGTGCAACTACCGGGGCGTGCGGAGGAGGCCATGGGGAAAGTATGCGGCGGAGATAAGGGATACTAAGAAAAATGGTGTGAGGGTGTGGCTTGGAACCTATGAGACTGCTGAGAATGCAGCTTTAGCTTATGATCGAGCCGCATTTAAAATGCACGGCTCGAAAGCTAAGCTGAATTTTCCTCATTTAATTGGCTCAGATCACGCTGAGCCAATTAGGGTTACATTAAAGAAACGTCCACTGGATGTTTCCTTGTCGTGTCCATCATCGTCCATGGTGGCTGCAAAGCAAAGTAAGGATGACTCTTCGGCGGATTTGGAGCTGAATGACTCAAATATGTGGCAGTTTTCCATAGACACTAGGTGGCAATAA 723 0.5118 MSPHALNTNVNALDHLELPVTTLFQDASASTPSMVAFCQSSSFRDIFLAENWAELPLKEDDADDMVIYGALREAATTGWFPANGNEVGNFDVVVKVENENQNSDTTAARGTHAPPRKGCNYRGVRRRPWGKYAAEIRDTKKNGVRVWLGTYETAENAALAYDRAAFKMHGSKAKLNFPHLIGSDHAEPIRVTLKKRPLDVSLSCPSSSMVAAKQSKDDSSADLELNDSNMWQFSIDTRWQ 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0824 240 CDD AP2 119 180 IPR001471 GO:0003700|GO:0006355
Ssu2g0824 240 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Ssu2g0824 240 Pfam AP2 domain 119 170 IPR001471 GO:0003700|GO:0006355
Ssu2g0824 240 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Ssu2g0824 240 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Ssu2g0824 240 PANTHER DNA-BINDING DOMAIN 29 223 IPR044808 GO:0003700|GO:0009873
Ssu2g0824 240 ProSiteProfiles AP2/ERF domain profile. 120 178 IPR001471 GO:0003700|GO:0006355
Ssu2g0824 240 SUPERFAMILY DNA-binding domain 120 179 IPR016177 GO:0003677
Ssu2g0824 240 SMART rav1_2 120 184 IPR001471 GO:0003700|GO:0006355
Ssu2g0824 240 PANTHER BNAC04G53270D PROTEIN 29 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0824 Ssu-Chr2 42699396 42700118 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0824 37 223 AP2-EREBP Transcription Factor Family AT2G44840 50.802 8.05e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu2g0824 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0824 K09286 - gmx:100804762 349.362