Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0819 ATGAAGTGGTCCACCTGTGGACCACAACTATCAGTTGTTGgatatattagtaataaaatcaATGGTAGATATTTAGAATCATGCTTAGCATCGTTGAATTACAAAACCTTCATCATTGAAGATTCTACCAATAAACAACATTcatatattaataagaaaaacttCCACACAAATCACAACAACCTCATCAATGACACCATGGCATGTGATGCTAAGCTTGTTATGCCTGTCATCATTGAAAGTTGTAGCGAGACATTTGATGGTCTCAAGTCCTTGTTGGTAGTGGATGGGGGCAACGACACCACTATGTGCATCACTTGCCCTTGGATTCAAGCCATCAATTTTGATCTTCCTCATGTCATTGCTGAGGCTGCTCGGTGCGATGTCGTGGAACATGTGTGTTTTGGCTTTGTACTAAAATATTGA 426 0.3756 MKWSTCGPQLSVVGYISNKINGRYLESCLASLNYKTFIIEDSTNKQHSYINKKNFHTNHNNLINDTMACDAKLVMPVIIESCSETFDGLKSLLVVDGGNDTTMCITCPWIQAINFDLPHVIAEAARCDVVEHVCFGFVLKY 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0819 141 Gene3D Vaccinia Virus protein VP39 60 133 IPR029063 -
Ssu2g0819 141 Gene3D - 21 78 IPR036388 -
Ssu2g0819 141 PANTHER O-METHYLTRANSFERASE 56 133 IPR016461 GO:0008168
Ssu2g0819 141 Pfam O-methyltransferase domain 58 126 IPR001077 GO:0008171
Ssu2g0819 141 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 56 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0819 Ssu-Chr2 42442367 42443005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0819 60 133 Monolignol Biosynthesis Gene Families AT5G54160 37.662 4.35e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0819 K22588 - rcu:8279657 98.5969