LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g0819	ATGAAGTGGTCCACCTGTGGACCACAACTATCAGTTGTTGgatatattagtaataaaatcaATGGTAGATATTTAGAATCATGCTTAGCATCGTTGAATTACAAAACCTTCATCATTGAAGATTCTACCAATAAACAACATTcatatattaataagaaaaacttCCACACAAATCACAACAACCTCATCAATGACACCATGGCATGTGATGCTAAGCTTGTTATGCCTGTCATCATTGAAAGTTGTAGCGAGACATTTGATGGTCTCAAGTCCTTGTTGGTAGTGGATGGGGGCAACGACACCACTATGTGCATCACTTGCCCTTGGATTCAAGCCATCAATTTTGATCTTCCTCATGTCATTGCTGAGGCTGCTCGGTGCGATGTCGTGGAACATGTGTGTTTTGGCTTTGTACTAAAATATTGA	426	0.3756	MKWSTCGPQLSVVGYISNKINGRYLESCLASLNYKTFIIEDSTNKQHSYINKKNFHTNHNNLINDTMACDAKLVMPVIIESCSETFDGLKSLLVVDGGNDTTMCITCPWIQAINFDLPHVIAEAARCDVVEHVCFGFVLKY	141

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g0819	141	Gene3D	Vaccinia Virus protein VP39	60	133	IPR029063	-
	Ssu2g0819	141	Gene3D	-	21	78	IPR036388	-
	Ssu2g0819	141	PANTHER	O-METHYLTRANSFERASE	56	133	IPR016461	GO:0008168
	Ssu2g0819	141	Pfam	O-methyltransferase domain	58	126	IPR001077	GO:0008171
	Ssu2g0819	141	PANTHER	3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE	56	133	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g0819	Ssu-Chr2	42442367	42443005	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g0819	60	133	Monolignol Biosynthesis Gene Families	AT5G54160	37.662	4.35e-08	48.9

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g0819	K22588		-	rcu:8279657	98.5969

Showing 1 to 1 of 1 entries