LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g0812	atgttgacTGTGACCAGTAGAACATCTAAGTcgtcaattattttattgttatatctAACGCTGAAAGATTGTGCATCACCGGTGTCCCACACTTCACACACTCCACCGTATTCTCTCCCAAAAAGAAGCGGGAAAATTCCTCCAAACACAAAACCCTCCAAAATCCAAAACACTCTTCACTTCACTTCCcgctcctctctctctctctctttcaaaaCCTGGTCGCATCGCATCGCACACACTAGATCGGAATCTCGATCCATGGCCGAGTCCGAATTCGAAGCCAACCTCGACCTCGAAGAGAAATCATGGCACCTCCTCGCGCTCCTCCTCCGAATCGGCCACGCCGTTTACCCGCAGCGCCTCGCCGCGCAGTGTCGTTTATTCCACGCGTCGCCGGACTTCGTCTGCCACGTCAGCACCCTCCCCAGGTCCCCTCTCTCCGTCACCGATAACGGACTCGTCATGCCCTCCGTTAGCGCCGTCTTCGCCCTCGGAAGCTTCTTCTCCCTCCGCTTCTCCCCGGAGCCGCAAACGCACCGTTTCAGGAAACGCAAGTTGCGTTTCGATTCCGACGaagGTGGAAGGGAGCACAAGAGGTTGGCGATTAGTCGCGGAGTTCACGAAATTTTATTCCAGAGTTTTGCTGTTGCCGCAGAGGCTCTGACGAGAAGAAATTTCCctgtaataaaatttgaatcacaGAATATAGGTAGCGGGAATTTTGTATTCCCCTTGCGTATTGATACAAATGGAGAGTGTTCAGGTCGTCCTGTGCCTAATTTTGAGCATAGGGAAGCCAATAAAGATGCCAGCACAAGCATGTCTAATGAAGGGGTTTCTAAATCTATTATCAAAGCAATTTACTTAAACTGTCCGAAGCAAGAGGACATAAAGAGATTCATGGAATGTAATCTCTTTGTTAATCGTGCTCTCCCGGATCCCTCTTTATGCAAAGAGGGTGTTGTTAGTAGTGTTGGATTTGGGAAGAAAATGGATCATTTTGACACATTTGTGCATGAATGTACTGAACAAAACAGTATGCATCCTGTGGATGAGGATGGTATTTGTAAAAGTAATACTTGCAAAGATCAACCAAGAGAATCTAATGAAGATGACAAGGTGGAAAGTGGTTCAAAGAAAGGGCTGATTGGTTCTGGCACAAATAGAGATAAGGAAGATGTTAGTCAGATGGTCAATGCTGCACTATGTGGAGAAGAATTGACTAATGGTTTGGAACAAAAGAACTGTGTCCATCcaataaatttggaaaaaaaggAAAGCGAGAGAAACACAGTGACCAagtctatttataaaatagcCAAGTCCTCTTCAAATCCAAAGCAGCTTTTGAAATCTTCTTGCATATTAAAGGAAGGACGGAAGACTGATCTACACCCTAGGTCACAAATTCTCAAAGAGTCACTAGCCTGTAATAAAGTTGGTAATGTTCCAAAAAATGTTGATCAATGTAAAAATGATCAGAAACTTACGACGAGGAAGCAAAATCATAAAGAGAACATGGCAGAAACTATTGCCATGACTCATAAGGTGGAGAAAAAAGCATATCCATCATTTCATGCTTTTACaatagaggaagaagaaggtTCAGgTGGTTATGGCACCGTTTACCGTGCTCAAAGAACTACTGATGGAAAAAGGGTTGCAATAAAATGTCCGCATAGTAATGCTCATAAAAACCATGTAAATAATGAACGGAATATGCTCGAGCGTTTTGGTGGTAAAAACTTCATAATAAGGTATGAAGGTTCTTTAAAAAATGGCAACAGCGACTGTTTTGTTTTAGAACATGTTGAGCATGACAGACCCGAGgttttgaaaaaagaaattgatataGTTCAGCTTCAGTGGTACGGGTATTGCATGTTCAGGGCCCTTTATTGCTTGCACAAAGAGGGAGTTGTTCACAGAGACGTTAAACCTGGAAACTTCCTTTTCTCTCGAAAGCTAAGCAAAGGCTACCTTATTGATTTCAACCTTGCAATGGATTTAAAGCAGAAGTACAACAGTGGAAGTAAATCAAAACAAAGCCTTGATGCATCATCCAATAatgtttctctctcttctgGTTCTGCCCCTTTGGTTCGAGACAAGAACCTTGGAGGCAGCAAGTCTTTTACATCCAGTAAAAGGGCTTTGGcagattataaaaattattctgaACTTAATAGGCATGTAAAGCAAAAGTCTTACACTGGTTCTCTGAAAAATTGTCCTGATAAGGCTGGTGGGAGTTTTCTTAGAGCACAAGGAACAGATGGCTCTGGTATAACTTCTGCTAAAGATGCTAGCACTAGGACTGCTTCTGCAGAGAGGCTCAGGGAGCCTTTACCTTCCCAAGGAAGAAAGGAGCTTATCAGCCTTGTGCAGAATTCTATGCAAGGTGCAAACAACAGTTCAACAATAGGTCCTTCTTCTCAAAGGAAAAGGGTTACTGCTCCGTCAGGCAGGGTAGATGgcaagattttttatattacccCAATGCCTCTGCATTCATCTACTGTTGCTGGGGGGTTATTGAGAAGCAAAGGAGAtggaaaacagaaaaaagaagGTTCATGCGTTGGAACCAAAGGATTCCGTGCCCCGGAGGTTTTGTTAAGGTCTCAGCATCAGGGACCTAAGATTGATATTTGGTCAGCTGGTGTCACTCTACTCTACATGGTGATCGGGAAGACTCCTTTCACTGGCGACCCAGAACAgaatgtaaaagaaattgttaaatTGCGGGGCAGTGAAGAGTTTTGGGAAGTGGCCAAGCTACATGACCGTGAATTATCTTTTTCTGTGGAGTTACTTGATGATCGATACTTGCAATCATGGGACTTAGAAAGCTGGTGCAAGATTCACTCAAAGAGGCCAGAGTTTCTTGAGCAGATCCCGAAATCGttatttgatttgttagatAAGTGTCTAACAGTAAACCCAAGAAATAGAATTAGTGCAGAAGAAGTTCTAAGACATGAATTCTTTGACTCATGCAATGAGTCCCTGAGGAAGCAAAGGATGATTCATCGAGCTCTCAGGTCGGACGCTGCAGCTTCCAGAGCAATCTGA	3078	0.4058	MLTVTSRTSKSSIILLLYLTLKDCASPVSHTSHTPPYSLPKRSGKIPPNTKPSKIQNTLHFTSRSSLSLSFKTWSHRIAHTRSESRSMAESEFEANLDLEEKSWHLLALLLRIGHAVYPQRLAAQCRLFHASPDFVCHVSTLPRSPLSVTDNGLVMPSVSAVFALGSFFSLRFSPEPQTHRFRKRKLRFDSDEGGREHKRLAISRGVHEILFQSFAVAAEALTRRNFPVIKFESQNIGSGNFVFPLRIDTNGECSGRPVPNFEHREANKDASTSMSNEGVSKSIIKAIYLNCPKQEDIKRFMECNLFVNRALPDPSLCKEGVVSSVGFGKKMDHFDTFVHECTEQNSMHPVDEDGICKSNTCKDQPRESNEDDKVESGSKKGLIGSGTNRDKEDVSQMVNAALCGEELTNGLEQKNCVHPINLEKKESERNTVTKSIYKIAKSSSNPKQLLKSSCILKEGRKTDLHPRSQILKESLACNKVGNVPKNVDQCKNDQKLTTRKQNHKENMAETIAMTHKVEKKAYPSFHAFTIEEEEGSGGYGTVYRAQRTTDGKRVAIKCPHSNAHKNHVNNERNMLERFGGKNFIIRYEGSLKNGNSDCFVLEHVEHDRPEVLKKEIDIVQLQWYGYCMFRALYCLHKEGVVHRDVKPGNFLFSRKLSKGYLIDFNLAMDLKQKYNSGSKSKQSLDASSNNVSLSSGSAPLVRDKNLGGSKSFTSSKRALADYKNYSELNRHVKQKSYTGSLKNCPDKAGGSFLRAQGTDGSGITSAKDASTRTASAERLREPLPSQGRKELISLVQNSMQGANNSSTIGPSSQRKRVTAPSGRVDGKIFYITPMPLHSSTVAGGLLRSKGDGKQKKEGSCVGTKGFRAPEVLLRSQHQGPKIDIWSAGVTLLYMVIGKTPFTGDPEQNVKEIVKLRGSEEFWEVAKLHDRELSFSVELLDDRYLQSWDLESWCKIHSKRPEFLEQIPKSLFDLLDKCLTVNPRNRISAEEVLRHEFFDSCNESLRKQRMIHRALRSDAAASRAI	1025

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g0812	1025	MobiDBLite	consensus disorder prediction	758	773	-	-
	Ssu2g0812	1025	PANTHER	CASEIN KINASE-RELATED	496	1010	-	-
	Ssu2g0812	1025	MobiDBLite	consensus disorder prediction	30	53	-	-
	Ssu2g0812	1025	SUPERFAMILY	Protein kinase-like (PK-like)	529	1012	IPR011009	-
	Ssu2g0812	1025	Pfam	Protein kinase domain	857	998	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g0812	1025	Pfam	Protein kinase domain	531	676	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g0812	1025	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	641	653	IPR008271	GO:0004672\|GO:0006468
	Ssu2g0812	1025	MobiDBLite	consensus disorder prediction	799	819	-	-
	Ssu2g0812	1025	MobiDBLite	consensus disorder prediction	356	379	-	-
	Ssu2g0812	1025	Gene3D	Transferase(Phosphotransferase) domain 1	490	685	-	-
	Ssu2g0812	1025	ProSiteProfiles	Protein kinase domain profile.	529	998	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g0812	1025	MobiDBLite	consensus disorder prediction	753	780	-	-
	Ssu2g0812	1025	PANTHER	CELL DIVISION CYCLE 7-RELATED PROTEIN KINASE	496	1010	-	-
	Ssu2g0812	1025	SMART	serkin_6	529	998	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g0812	1025	Gene3D	Transferase(Phosphotransferase) domain 1	843	1023	-	-
	Ssu2g0812	1025	MobiDBLite	consensus disorder prediction	353	392	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g0812	Ssu-Chr2	42166153	42174425	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g0812	862	1004	Core Cell Cycle Gene Families	AT2G38620	31.724	1.93e-11	63.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-2	Ssu2g0812		Pkinase	4e-20	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g0812	K02214		-	gmx:100795742	1535.01