Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0808 ATGGAAGGAGAGAGAGGTGTTAATCCCAATTATGAGCTCCAAGTTTCGTTCACAAACACCCCTCAAGCCATCCACGAAATGGGTTTTGTTCAATTTGAAGAAAACCAGGTTCTTAGCTTCTTGGCACCCTCTGCTCAATCCCAATCTTCTCAGCTCTCTCAATCTCTAAACGCAGGCGGCAGCAACCTGGCGGTCGCCGCTACCACaaccgccaccaccactgccaccacttCCACAGCAACAATTGGTTTCAGCCATAATGACCTTGTATCCAGAACTTCTTGGAATAATGAACAGGTGCGAACACTGGATCCCAAAGCTGTCAATGATGAAAATTGCACCGGAAATACTAGTGATGGCAACAACACATGGTGGAGAAGTGCAGGCGCTGAGAAGAACAAGGTGAAAGTGAGGAGGAAGCTGAGAGAGCCACGGTTTTGTTTCCAAACAAGAAGTGATGTGGATGTGCTTGATGATGGCTACAAATGGAGGAAGTACGGTCAGAAAGTTGTGAAGAATAGCCTTCACCCAAGAAGTTACTACCGCTGTACCCATAACAACTGTAGGGTGAAGAAAAGAGTTGAACGACTCTCAGAAGATTGTCGTATGGTAATAACTACCTATGAAGGCAGACACAATCACTCTCCTTGCGACGACTCAAATTCATCGGAACATGAATGTTTCACCTCTTTTTGA 696 0.4368 MEGERGVNPNYELQVSFTNTPQAIHEMGFVQFEENQVLSFLAPSAQSQSSQLSQSLNAGGSNLAVAATTTATTTATTSTATIGFSHNDLVSRTSWNNEQVRTLDPKAVNDENCTGNTSDGNNTWWRSAGAEKNKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHECFTSF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0808 231 ProSiteProfiles WRKY domain profile. 152 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g0808 231 Pfam WRKY DNA -binding domain 158 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g0808 231 Gene3D WRKY domain 144 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu2g0808 231 PANTHER WRKY TRANSCRIPTION FACTOR 12-RELATED 14 229 - -
Ssu2g0808 231 SUPERFAMILY WRKY DNA-binding domain 149 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu2g0808 231 SMART WRKY_cls 157 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g0808 231 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 14 229 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0808 Ssu-Chr2 41906166 41914364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0808 3 231 WRKY Transcription Factor Family AT2G44745 55.696 9.48e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu2g0808 WRKY 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0808 - - gmx:100800671 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0808 2 41906166 41914364 Ssu2g0808 2 41906166 41914364 ECH
Ssu2g0808 2 41906166 41914364 Ssu3g0563 3 14258077 14266777 PCT