Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0787 ATGAATTCATCATCACTTGGTCCACCGCCTGTTAATAAAGCTAGCACTCCAACAGGGGTTGCGCCTGTGACCATTAAGCCAAGTGGTACTTCTGCTATTGTGGACTCATCATTGTCCAATTCCAGTATTTCTGGTGTTCAAAATGGAGAATCCCCTAGTTCAACAGCATCTTGTGATGCTAGTTCCTCTGTGCTGCAAAAAAGGTCTGAAACTTGTTCAGAAATCTCTTTACAACAGTCTAAGTTGTCTAGTGATTCTGTCCCAGTTGTGTCTAATAATGAAGGCGGGAGGGAATCTCTTAGTAGGTCCAACTCTTTGAAGGATAAGAAACCAGGGAAGAAAGGTCAATTATCACAGCATCAGGTTTCTGTACAATCTCCCACAGCAGATAATATGCCTTCTCGAGCTGTTGACCGTGGTATATCTGATACTGGAGTTCCCGAAattgtaggaactaaaacaaatCATTCTGTGGCAATTATCACTGAAGATCTTCCAACATCTGATACAATATCTAGTAGCATTTCTACTGCTGTTGAAGTGAAGACCAATGGGTCTGCAGAAGTTTCTGCTTGTGTTTCAGCTGAAGGATCTGGTGCACAAGCTGCTGACAGAGTGCACAATCATAAGCCTGATAAGATAGATGAATTAGCTGAAGGAAATTCTGGCACATCAGATCTGCAGTCTGCTGACCTTCCTGAAACAACATCAAAGCATGTCAAGGATGGCTCAGAGAATGCTGGCGGTGAGTCAGGTACCAAGGATAGACCAATTATAGAACCAAATAAGTTGAAGCCTACGTctaaagggaagaagaaaagaaaagagatactTCAGAAAGCAGATGCTGCTGGGTCAACTTCTGATCTTTATAATGCATACAAGGGACctgaggaaaagaaagaagctGTCTTAAGTTCTGAGAGCACAGAAAGTGCTTCTACTTATCGAAGTTTGAAGCAGTTGCCAAAAAATGCTGCTCGGTCAGATGCTATAGCAATTGAGAAATGTGGATACAGTAAAGCTGAACTTGATGACTGGGAGGATGCTGCTGACATTTCTACCCCCAAACTGGAGGTTCATGATAAATCTCAACAAGTTGGTGATGGAAGTGGAAGTACAGCCAAAAAGTACTCACGGGATTTCCTTCTGAAATTTGCAGAGCAATGCACTGATCTTCCTGAAGGTTTTGAAATCACGACAGACATTGCTGAAGCTTTGATGAGTGCCAATATTGGTAGTTCTTACGTTTTTGAGCGTGATTCACATCCTAGTCCTGGAAGAATTGTAGATAGACCAGGTGGGATGTCTCGGATGGATCGCCGTGGGGATGTTGTAATGGAAGAAGACAGATGGAGTAAAGTTTCTGGTGCTTTTCGTTCTGGACGTGGTTTGGATGGCACTGGGGGCAATGTGGGATTTCGATCTGGCCAAGGAGGCAATTTTGGTGTTTTAAGGAACCCTCGTGCACAGACACCACAATATGCTGGAGGGATCCTTTCTGGGCCAATGCAATCTGTGGGAAATCAGGGTGGAATGCAAAGAAATAGCCCTGATGGGGAGAGGTGGCAGCGTTCTGCTAGCTTCCAGCTGAGGGGTTTAATTCCTTCTCCTACCCAAACTCCTTTACAGATGATGCACAAAGCTGAGAAGAAGTATGAAGTGGGTAACGTGACAGATGTGGAAGTGGTAAAGCAGAGGCAGTTGAAAGCTATCTTGAACAAACTAACTCCTCAGAATTTTGATAGACTTTTTGAACAGGTGAAGGCAGTTAATATTGACAATACAGTCACCCTTACTGGTGTCATCTCACAAATTTTTGAGAAGGCTCTGATGGAACCTACCTTTTGTGAAATGTATGCCAACTTCTGTTTACATCTGGCTTCTGAGTTGCCTGATTTTGGTGAGGACAGTGaaaagataacttttaaaaGGTTACTATTAAACAAGTGCCAGGAAGAATTTGAGAGGGGTGAAAGAGAACAAGAAGAAGCAAATAAGGCTGATGAGGGTGAGGTTAAGCAGTCTGCTGAGGAAAGGGAAGAAAGAAGAATTAAGGCAAGAAGACGCATGTTGGGAAACATCAGATTGATTGGAGAActatataagaagaaaatgttgaCAGAGAGGATAATGCATGAGTGTATCAAGAAGTTACTGGGTCAGTATCAGGATCCAGATGAGGAAGACATTGAAGCTTTGTGCAAGCTAATGAGTACTATTGGGGAGATGATTGACCATCCCAAAGCCAAGGAACATATGGATGTATATTTCGAAAGGATGAAATTATTATCAAACAACATGAAATTATCTTCTAGGGTGAGGTTCATGTTGAAGGATGCCATTGATTTGAGAAAGAATAAATGGCAACAAAGGAGGAAAGTAGAAGGTCCAAAGAAGATTGAGGAGGTACACAGGGATGCCGCTCAGGAGAGGCAGGCCCAAGCTGGTAGGCCGGGTCGTGGTCTTGGCAACAATCAATCAGCAAGAAGGAATCCCATGGATTTTGGTCCAAGAGGATCATCTATGCTGTCTTCTCCTAATGCTCAAATGGGTGGATTGCGTGGTCTTCCTACTCAAGTTCGTGGGTATGGTTCTCAGGATACTCGATTTGAGGAACGACAATCTTATGAGGGTAGGACCTTGTCAGTTCCTTTGCCTCAAAGACCCTTAGGAGATTATTCTATAACCTTGGAACCCCAAGGTGGTCTTGCTAGGGGAATGTCTATGAGAGGATCAACAGCAATTTCCAATTTGCCAATATCTGATGTGCTTCCTGTCCCTGGAGACTCTCATAGAATGACTACAGGTCTTAATGGTCACAGCAATTTATCAGAGCGTGCACCATATAGTTCAAGGGAAGATCTTGTGTCAAGATATGGTACagataggtcttcaggtccatCTGCTTATGATCAATCAAGTGCTGCAGAGCGTAATGTAAACCATGGTAACAGAGACTTGAGGAGTGCAGATCGGAATCTTGACAGACTTGTTGCAACTTCATCTCCTGCTCAATTGCAAGGGTCAATAGTCTCTCAGAATGCTTCTTCAGAGAAGATTTGGACAGAAGAACGACTAAGGGACATGTCCTTGTCAGCAATCAGGGAATACTACAGTGCTAGAGATGAGAATGAACTTGCTTTATGTGTCAAAGAGTTGAACTCTCCAAGCTTCCATCCTTCCATGGTTTCTCTCTGGGTCACAGATTCATTTGAGAGAAAGGACACGGAAAGAGATCTTTTGGCCAAACTGCTTGTCAACCTAGTGAAATCTAAGGATGGCACCTTGAGTCAAGCTCAGATCATCAAAGGGTTTGAATCTGTTCTCAATACATTGGAGGATGCTGTTAACGATGCCCCCAGAGCAGCCGAGTTTCTCGGCCGAATTTTTGCGAAAGTTATAACAGAGAGTGTAGTTACTTTGAGTGAGATTGGGCGGTTAATACATGATGGTGGAGAGGAGCCAGGTAGTCTCTTAGAAGTTGGACTTGCAGCTGATGTTCTTGGAAGCACGTTGGAGGTAATTCAATGTGAGAAGGGAGACATGGTTCTAAATGAGATCCGTTCAAGCTCTAACTTGCGGTTGGAATCTTTCCGGCTACCTAATTCTACAATATCAATGAAGttggaaaaatttatttag 3645 0.4192 MNSSSLGPPPVNKASTPTGVAPVTIKPSGTSAIVDSSLSNSSISGVQNGESPSSTASCDASSSVLQKRSETCSEISLQQSKLSSDSVPVVSNNEGGRESLSRSNSLKDKKPGKKGQLSQHQVSVQSPTADNMPSRAVDRGISDTGVPEIVGTKTNHSVAIITEDLPTSDTISSSISTAVEVKTNGSAEVSACVSAEGSGAQAADRVHNHKPDKIDELAEGNSGTSDLQSADLPETTSKHVKDGSENAGGESGTKDRPIIEPNKLKPTSKGKKKRKEILQKADAAGSTSDLYNAYKGPEEKKEAVLSSESTESASTYRSLKQLPKNAARSDAIAIEKCGYSKAELDDWEDAADISTPKLEVHDKSQQVGDGSGSTAKKYSRDFLLKFAEQCTDLPEGFEITTDIAEALMSANIGSSYVFERDSHPSPGRIVDRPGGMSRMDRRGDVVMEEDRWSKVSGAFRSGRGLDGTGGNVGFRSGQGGNFGVLRNPRAQTPQYAGGILSGPMQSVGNQGGMQRNSPDGERWQRSASFQLRGLIPSPTQTPLQMMHKAEKKYEVGNVTDVEVVKQRQLKAILNKLTPQNFDRLFEQVKAVNIDNTVTLTGVISQIFEKALMEPTFCEMYANFCLHLASELPDFGEDSEKITFKRLLLNKCQEEFERGEREQEEANKADEGEVKQSAEEREERRIKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQYQDPDEEDIEALCKLMSTIGEMIDHPKAKEHMDVYFERMKLLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQAGRPGRGLGNNQSARRNPMDFGPRGSSMLSSPNAQMGGLRGLPTQVRGYGSQDTRFEERQSYEGRTLSVPLPQRPLGDYSITLEPQGGLARGMSMRGSTAISNLPISDVLPVPGDSHRMTTGLNGHSNLSERAPYSSREDLVSRYGTDRSSGPSAYDQSSAAERNVNHGNRDLRSADRNLDRLVATSSPAQLQGSIVSQNASSEKIWTEERLRDMSLSAIREYYSARDENELALCVKELNSPSFHPSMVSLWVTDSFERKDTERDLLAKLLVNLVKSKDGTLSQAQIIKGFESVLNTLEDAVNDAPRAAEFLGRIFAKVITESVVTLSEIGRLIHDGGEEPGSLLEVGLAADVLGSTLEVIQCEKGDMVLNEIRSSSNLRLESFRLPNSTISMKLEKFI 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0787 1214 MobiDBLite consensus disorder prediction 101 115 - -
Ssu2g0787 1214 Coils Coil 648 680 - -
Ssu2g0787 1214 MobiDBLite consensus disorder prediction 658 681 - -
Ssu2g0787 1214 MobiDBLite consensus disorder prediction 116 132 - -
Ssu2g0787 1214 SMART if4_15 566 788 IPR003890 GO:0003723|GO:0005515
Ssu2g0787 1214 SUPERFAMILY ARM repeat 1022 1207 IPR016024 -
Ssu2g0787 1214 MobiDBLite consensus disorder prediction 1 100 - -
Ssu2g0787 1214 Pfam MIF4G domain 566 788 IPR003890 GO:0003723|GO:0005515
Ssu2g0787 1214 Gene3D - 566 801 - -
Ssu2g0787 1214 MobiDBLite consensus disorder prediction 1 150 - -
Ssu2g0787 1214 SMART ma3_7 1027 1141 IPR003891 -
Ssu2g0787 1214 MobiDBLite consensus disorder prediction 418 439 - -
Ssu2g0787 1214 ProSiteProfiles MI domain profile. 1026 1150 IPR003891 -
Ssu2g0787 1214 MobiDBLite consensus disorder prediction 934 990 - -
Ssu2g0787 1214 MobiDBLite consensus disorder prediction 962 981 - -
Ssu2g0787 1214 MobiDBLite consensus disorder prediction 790 812 - -
Ssu2g0787 1214 MobiDBLite consensus disorder prediction 502 521 - -
Ssu2g0787 1214 MobiDBLite consensus disorder prediction 935 949 - -
Ssu2g0787 1214 Pfam MA3 domain 1032 1139 IPR003891 -
Ssu2g0787 1214 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 31 1214 IPR045208 GO:0003743
Ssu2g0787 1214 MobiDBLite consensus disorder prediction 235 249 - -
Ssu2g0787 1214 MobiDBLite consensus disorder prediction 198 317 - -
Ssu2g0787 1214 MobiDBLite consensus disorder prediction 839 853 - -
Ssu2g0787 1214 MobiDBLite consensus disorder prediction 203 219 - -
Ssu2g0787 1214 MobiDBLite consensus disorder prediction 790 855 - -
Ssu2g0787 1214 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 2 31 1214 - -
Ssu2g0787 1214 Gene3D - 1019 1214 - -
Ssu2g0787 1214 MobiDBLite consensus disorder prediction 503 521 - -
Ssu2g0787 1214 SUPERFAMILY ARM repeat 565 790 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0787 Ssu-Chr2 41261529 41268320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0787 41 1213 Eukaryotic Initiation Factors Gene Family AT3G60240 52.486 0.0 1066
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0787 K03260 - gmx:100798562 2027.68