Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0786 ATGTCCTTCAATCAATCAAAGTCGGAGAAGAACGACGCCGTTTACCGAAGAACGGGGCGATCCTCGAGCTTCAACCAGCAGAGAGGTTCCTACGGCAGGGGCGGCGGTGGCGGTGGCGGGACCGCGCCGTCGATCAATCCACTCTCCTCTACGCGGAGTTTTAACAAGAAGTCTAATAATGCACAAGGTGGGCAATCTAGGCTAAACCCTTACCAGGGAAATTCAACAGAGTCGAATAATGCATCTGCTGCCCAGACCATTAATAATGGTACCCATGTACAGCCACAATTACGTGGAGCATCAGATGGACCAGTTTCAAAGTCATCTGAATCATCAGCTGCACAGGGGAGCGCTGGAATTGTTCCAATGGCTCCAACTTCTCATCAGCCCCGCTTGATTTCTGATCCAGTCCCTCCCACAAGCCCTGCTATGGGAGATGTGTCCAAGGCATTCCCTTTTCAATTTGGATCCATCATTCCTGGCTTTATTAATGGGATGGCAATTCCTGCTCGTACAAGTTCAGCTCCTCCTAATTTAGATGAGCAGAAGTGTGATCAAATTCTTCACAATTCTTATAAATCTGTGCCTTCGGTACCAATTCCTCCTGTTCCTAAGCATCAGCAACCACCTAGGAAAGATGCTGGTGTCACCGAGCAATCTAATGCCAGGGAAACTCATGTAGGGGGGACTAAGGCAAAAAAGGATCCTCAGGTGTCAGCTTTGACCCCAGCAAGCCAGATGCCGAAGCCCTCTGGTGTTCCTGTAACTGGGATTTCAATGTCAACGCCATATCACCAGTCACAGGCTCCTTTACAGTTTGGTGGTGCTAATCCACAGATTCAATCTCAGGGTATGTCAACGACATCCCTCCAGATGCCTATACCAATGCCTTTACCAATTGGCAATGCTACACAAGTGCAACAGCCAGTTTTTGTTCCAGGTCTTCAACCTCATCCAATGCATCCTCAGGGGATCATGCATCAAGGCCAAAACATGAGTTTTACTCCTCAAATGGGTCATCAGTTCAACATGGGATTGGCATCAGCCCTCAATATCCCCCCCAGCAGCAAGGAGGAAAATTTGCAGGTCTTCGAAAAACTACTCCTGTAA 1110 0.4847 MSFNQSKSEKNDAVYRRTGRSSSFNQQRGSYGRGGGGGGGTAPSINPLSSTRSFNKKSNNAQGGQSRLNPYQGNSTESNNASAAQTINNGTHVQPQLRGASDGPVSKSSESSAAQGSAGIVPMAPTSHQPRLISDPVPPTSPAMGDVSKAFPFQFGSIIPGFINGMAIPARTSSAPPNLDEQKCDQILHNSYKSVPSVPIPPVPKHQQPPRKDAGVTEQSNARETHVGGTKAKKDPQVSALTPASQMPKPSGVPVTGISMSTPYHQSQAPLQFGGANPQIQSQGMSTTSLQMPIPMPLPIGNATQVQQPVFVPGLQPHPMHPQGIMHQGQNMSFTPQMGHQFNMGLASALNIPPSSKEENLQVFEKLLL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0786 369 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 116 354 IPR045208 GO:0003743
Ssu2g0786 369 MobiDBLite consensus disorder prediction 43 116 - -
Ssu2g0786 369 MobiDBLite consensus disorder prediction 193 252 - -
Ssu2g0786 369 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4G-LIKE 116 354 - -
Ssu2g0786 369 MobiDBLite consensus disorder prediction 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0786 Ssu-Chr2 41257978 41261232 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0786 1 343 Eukaryotic Initiation Factors Gene Family AT3G60240 36.585 7.89e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0786 K03260 - gmx:100798562 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0786 2 41257978 41261232 Ssu2g0786 2 41257978 41261232 ECH
Ssu2g0786 2 41257978 41261232 Ssu3g1538 3 40819184 40900782 PCT