LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g0784	ATGCCTAATCTCAGCCTTGACCGGGTGCTATTTCGTAAGAACTTGAAGGAAGAGCCACTTGGATGGATGAGGCGTGGGAAAATTGTGAAGGGTTTGGCAGCTGCATTGCACTATTTGCATGAGCAGTTGGAGACTCAAATCATTCATAGGGATGTGAAGACCAGCAATGTGATGCTTGATTCCCATTACAATGCTAGGTTGGGGGACTTTGGCTTGGCAAGGTGGCTAGAGCATGAGCTTGAGTATGAGTATGAGACAAGGAAAGCATCAACATCAAGCAAGTTTGAGCATTTCAGGTTGAGTGAGACAACAAGGATTGGTGGCACAATTGGGTACTTGCCCCCTGAGAGCTTCCAGAGAAGGAGCATTGCTACCTCAAAATCTGATGTGTTCAGCTTTGGGATAGTTGTGTTGGAGGTGGTGTCTGGAAGGAGGGCTATTGATCTCACATACCCTGATGAGAAAATCATCTTGCTTGATTGGGTCAGAAGGCTTAGTGATGAAGGGAGGCTTGTTGGTGCTGGGGACACAAGGCTAATAGATGGTTCCTACAAGGTTTTTGAGATGGAGCACATGATTCACATAAGCCTCTTGTGCACACTCCATGATCCCCAATTGAGACCAAGCATAAAGTGGGTTGTGGAAGAACTTTCTGACATGTCAAACAAGTTGCCCACACTCCCTTCATTTCACTCCCATCCTATGTATATCTCTTTGTCCTCCTCATCTGAGACTAGTCCAGGCAGCACAAAAGGCACTGGCTCAGGCTCAGGCTCAGGAACAGAAAATGCTAGCAATCACACTTGTTTCAATTCCAAATATGTCACAGCTACAGGAGAGACAATGTATGTAACTGCTGAAGCTGAACACAGAAGCAATGGAACTAGCTCTTCTAAGAGTAGCAAGAGAATGATGCATCACCAGCCATCATTCTCTGTGGTGGAAACACCTAGGGAGATACCGTACAAGGAGATTTTTTCAGCCACAGATAACTTCTCAGAGTCCAGAAGGGTGGCTGAGCTAGATTTTGGAACTGCATACCATGGCATCCTTGATGGCCGCTACCATGTCATGGTGAAACGCCTTGGCTTGAAGACTTGCCCTGCATTGCGCCAAAGATTCTCCAATGAGCTAAGGAACTTGGCAAAACTTCGCCACAGGAATTTGGTGCAGCTTAGAGGGTGGTGCACTGAGCAAGGAGAGATGCTTGTGGTGTATGATTACTCAGCTAGAAGAATCCTGAGTCACCAACTTTCACCATCATCACAATGGTAA	1275	0.4635	MPNLSLDRVLFRKNLKEEPLGWMRRGKIVKGLAAALHYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGLARWLEHELEYEYETRKASTSSKFEHFRLSETTRIGGTIGYLPPESFQRRSIATSKSDVFSFGIVVLEVVSGRRAIDLTYPDEKIILLDWVRRLSDEGRLVGAGDTRLIDGSYKVFEMEHMIHISLLCTLHDPQLRPSIKWVVEELSDMSNKLPTLPSFHSHPMYISLSSSSETSPGSTKGTGSGSGSGTENASNHTCFNSKYVTATGETMYVTAEAEHRSNGTSSSKSSKRMMHHQPSFSVVETPREIPYKEIFSATDNFSESRRVAELDFGTAYHGILDGRYHVMVKRLGLKTCPALRQRFSNELRNLAKLRHRNLVQLRGWCTEQGEMLVVYDYSARRILSHQLSPSSQW	424

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g0784	424	ProSiteProfiles	Protein kinase domain profile.	1	236	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g0784	424	MobiDBLite	consensus disorder prediction	288	307	-	-
	Ssu2g0784	424	PANTHER	-	1	420	-	-
	Ssu2g0784	424	SMART	serkin_6	1	236	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g0784	424	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	47	59	IPR008271	GO:0004672\|GO:0006468
	Ssu2g0784	424	PANTHER	RECEPTOR LIKE PROTEIN KINASE S.2	1	420	-	-
	Ssu2g0784	424	Gene3D	Phosphorylase Kinase; domain 1	291	408	-	-
	Ssu2g0784	424	ProSiteProfiles	Protein kinase domain profile.	332	424	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g0784	424	Pfam	Protein tyrosine and serine/threonine kinase	337	418	IPR001245	GO:0004672\|GO:0006468
	Ssu2g0784	424	SUPERFAMILY	Protein kinase-like (PK-like)	1	217	IPR011009	-
	Ssu2g0784	424	Gene3D	Transferase(Phosphotransferase) domain 1	1	226	-	-
	Ssu2g0784	424	SUPERFAMILY	Protein kinase-like (PK-like)	297	414	IPR011009	-
	Ssu2g0784	424	MobiDBLite	consensus disorder prediction	238	265	-	-
	Ssu2g0784	424	MobiDBLite	consensus disorder prediction	286	311	-	-
	Ssu2g0784	424	Pfam	Protein kinase domain	24	148	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g0784	Ssu-Chr2	41225095	41226369	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g0784	322	408	Receptor kinase-like Gene Family	AT3G53810	37.500	2.12e-11	63.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Ssu2g0784		Pkinase	8.9e-22	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g0784	-		-	gmx:100781955	717.613