Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0782 ATGGGGAGAAGACCTGCAAGGTGTTATCGACAAATTAAGAACAAGCCGTACCCGAAGTCACGGTTTTGCCGCGGTGTTCCTGATCCCAAGATCAGGATTTATGATGTTGGTATGAAGAAGAAAGGTGTTGACGAGTTTCCTTTCTGCGTGCATTTGGTGAGTTGGGAGAAGGAGAATGTTTCCAGCGAGGCGCTGGAGGCTGCCAGGATTGCTTGCAACAAGTACATGGCGAAATTTGCTGGGAAGGATGCATTCCACTTGAGGGTCAGGGTGCATCCCTTCCATGTCCTTAGGATCAACAAGATGCTTTCGTGTGCCGGAGCCGATAGGCTCCAGACCGGGATGCGAGGTGCGTTTGGAAAGCCGCAGGGTACTTGTGCTAGAGTGGCTATTGGCCAGGTCCTCCTATCTGTCCGCTGCAAGGACAGCAACAGCCATCATGCACAAGAGGCCCTTCGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATTATAGTTAGCAGGAAGTGGGGGTTCACCAAGTTTAGCCGCACTGATTATCTGAAGTACAAGTCAGAGAACAGGATTATGCCTGATGGTGTGAATGCAAAGCTTCTTGGGTGCCATGGACCATTGGCTGACCGCCAACCAGGAAGAGCCTTTTTGTCTACCAGTGCTACTGCATAG 669 0.5067 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIMPDGVNAKLLGCHGPLADRQPGRAFLSTSATA 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0782 222 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Ssu2g0782 222 Gene3D Ribosomal protein L10e/L16 1 217 IPR036920 GO:0003735|GO:0005840|GO:0006412
Ssu2g0782 222 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 218 - -
Ssu2g0782 222 PANTHER 60S RIBOSOMAL PROTEIN L10 1 218 IPR001197 GO:0003735|GO:0005840|GO:0006412
Ssu2g0782 222 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Ssu2g0782 222 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Ssu2g0782 222 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Ssu2g0782 222 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Ssu2g0782 222 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0782 Ssu-Chr2 41216977 41218349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0782 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.909 6.79e-144 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0782 K02866 - pvy:116105818 448.743