Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0780 ATGGATGAGTCACGGGAACGGTGGCTTTCTTATTTGGAAATGgatgagtgtaatttatttgGTGACATGAACTCTCTTGTCGAAGTGCTCAAGGGAGAGAGTTCCGTGCAGCCAGAACAACTATCATGCAAAAGTCACCCTTCTGATTCAAATTTCACTAAAGAAGGCACCACCCTTCTAAGAAACCCTATTGGCAATTCATCGTCTTTGGAAGAGAACGCTGGCTTTGATAATTGTACTAGTCTCAAACAACATGCATCTCCAGATAAACCTTTCTCCTCAATGTCCTACACTCTTTCATTCGAGGACCCAATGGCACTGCCATATATTGTCAAAAAAGCATACCAATATCATGGTGAACATTCAAAGGAGACCCAAAAAGAACcaaacaataatagaaaatcTAAGAGGAGTAGAAGCTCTTCCCAGATACAAGATCACATAATGaatgagagaaagaggagagagaatatCACCAAACTGTTCATAGCACTTTCAGCTATTATTCCGGGGTTGAAAAAGGTGGACAAGGCTTCTGTCCTTGTAAATGCCATCGATTATGTGAAATATCTTCAGAAGCGTGTAAAGGATTTGGAGGAAGAgagcaaaaagagaaaaatagaatcCGCAGTATCCTTCAAAGTGAACAAATCCCATGTTAAAACTGTTGCTGCTGACGACTTTTCATGCACCCCTGATGGCTTAGATAGACCTATCAATATATGTCCCAAAGTTGAAGCTAGAGTCTCAGGAAAAGATGTTCTCATCAGAGTTATGTGTGATAAACAAAAGGACATTGTTCCTAAGCTCCTGGGCAAGCTTGAAGCTCATGATCTCTCCATAGTTTGTAGCAATGTTTTGCCGTTTGGAAATTCCGCTCTGAACATTACTTGCATTGCTCAGatgGATCATGAATTCAGCATGACAATGGGCGACCTAGCGGAAATTTTGACTGAGGATTTGTTCGAGTGTTGTTACTAA 981 0.3782 MDESRERWLSYLEMDECNLFGDMNSLVEVLKGESSVQPEQLSCKSHPSDSNFTKEGTTLLRNPIGNSSSLEENAGFDNCTSLKQHASPDKPFSSMSYTLSFEDPMALPYIVKKAYQYHGEHSKETQKEPNNNRKSKRSRSSSQIQDHIMNERKRRENITKLFIALSAIIPGLKKVDKASVLVNAIDYVKYLQKRVKDLEEESKKRKIESAVSFKVNKSHVKTVAADDFSCTPDGLDRPINICPKVEARVSGKDVLIRVMCDKQKDIVPKLLGKLEAHDLSIVCSNVLPFGNSALNITCIAQMDHEFSMTMGDLAEILTEDLFECCY 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0780 326 Coils Coil 181 208 - -
Ssu2g0780 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Ssu2g0780 326 PANTHER BHLH TRANSCRIPTION FACTOR 5 325 - -
Ssu2g0780 326 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 5 325 - -
Ssu2g0780 326 Gene3D - 133 214 IPR036638 GO:0046983
Ssu2g0780 326 Pfam Helix-loop-helix DNA-binding domain 146 192 IPR011598 GO:0046983
Ssu2g0780 326 SMART finulus 148 197 IPR011598 GO:0046983
Ssu2g0780 326 MobiDBLite consensus disorder prediction 119 150 - -
Ssu2g0780 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 206 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0780 Ssu-Chr2 41150307 41155051 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0780 7 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.911 1.16e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g0780 HLH 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0780 - - gmx:100799087 444.506